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Recommendations for improving statistical inference in population genomics

PLoS biology, 2022-05, Vol.20 (5), p.e3001669-e3001669

2022

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A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus

PLoS biology, 2014-12, Vol.12 (12), p.e1002015-e1002015

2014

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Evolutionary rate covariation reveals shared functionality and coexpression of genes

Genome research, 2012-04, Vol.22 (4), p.714

2012

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genetic basis of adaptive pigmentation variation in Drosophila melanogaster

Molecular ecology, 2007-07, Vol.16 (14), p.2844-2851

2007

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A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins

Molecular biology and evolution, 2010-05, Vol.27 (5), p.1152-1161

2010

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Recent and Long-Term Selection Across Synonymous Sites in Drosophila ananassae

Journal of molecular evolution, 2016-08, Vol.83 (1-2), p.50-60

2016

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Functional Divergence of the bag-of-marbles Gene in the Drosophila melanogaster Species Group

Molecular biology and evolution, 2022-07, Vol.39 (7)

2022

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The coevolutionary period of Wolbachia pipientis infecting Drosophila ananassae and its impact on the evolution of the host germline stem cell regulating genes

Molecular biology and evolution, 2014-09, Vol.31 (9), p.2457-2471

2014

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Evidence for Positive Selection on Drosophila melanogaster Seminal Fluid Protease Homologs

Molecular biology and evolution, 2008-03, Vol.25 (3), p.497-506

2008

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Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila

Molecular biology and evolution, 2009-07, Vol.26 (7), p.1591-1605

2009

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Maximum Likelihood Estimation of Ancestral Codon Usage Bias Parameters in Drosophila

Molecular biology and evolution, 2007-01, Vol.24 (1), p.228-235

2007

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Temporally Variable Selection on Proteolysis-Related Reproductive Tract Proteins in Drosophila

Molecular biology and evolution, 2012-01, Vol.29 (1), p.229-238

2012

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Positive darwinian selection promotes heterogeneity among members of the antifreeze protein multigene family

Journal of molecular evolution, 2002-03, Vol.54 (3), p.403-410

2002

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Patterns of Mutation and Selection at Synonymous Sites in Drosophila

Molecular biology and evolution, 2007-12, Vol.24 (12), p.2687-2697

2007

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Phylogenetic incongruence in the Drosophila melanogaster species group

Molecular phylogenetics and evolution, 2007-06, Vol.43 (3), p.1138-1150

2007

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Recurrent Positive Selection at Bgcn, a Key Determinant of Germ Line Differentiation, Does Not Appear to be Driven by Simple Coevolution with Its Partner Protein Bam

Molecular biology and evolution, 2007-01, Vol.24 (1), p.182-191

2007

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Inferring Selection in Partially Sequenced Regions

Molecular biology and evolution, 2008-02, Vol.25 (2), p.438-446

2008

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Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes

Genome research, 2005-09, Vol.15 (9), p.1211

2005

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Positively Selected Disease Response Orthologous Gene Sets in the Cereals Identified Using Sorghum bicolor L. Moench Expression Profiles and Comparative Genomics

Molecular biology and evolution, 2009-09, Vol.26 (9), p.2015-2030

2009

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Microsatellite variation in colonizing and palearctic populations of Drosophila subobscura

Molecular biology and evolution, 2001-05, Vol.18 (5), p.731-740

2001

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Directional evolution of size coupled with ascertainment bias for variation in Drosophila microsatellites

Molecular biology and evolution, 2003-04, Vol.20 (4), p.660-662

2003

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The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster

Molecular biology and evolution, 1998-12, Vol.15 (12), p.1751-1760

1998

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Distribution and abundance of microsatellites in the yeast genome can Be explained by a balance between slippage events and point mutations

Molecular biology and evolution, 2000-08, Vol.17 (8), p.1210-1219

2000

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Polymorphism in abalone fertilization proteins is consistent with the neutral evolution of the egg's receptor for lysin (VERL) and positive darwinian selection of sperm lysin

Molecular biology and evolution, 2001-03, Vol.18 (3), p.376-383

2001

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Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans

Molecular biology and evolution, 1997-12, Vol.14 (12), p.1252-1257

1997

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Recommendations for improving statistical inference in population genomics

A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus

Evolutionary rate covariation reveals shared functionality and coexpression of genes

genetic basis of adaptive pigmentation variation in Drosophila melanogaster

A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins

Recent and Long-Term Selection Across Synonymous Sites in Drosophila ananassae

Functional Divergence of the bag-of-marbles Gene in the Drosophila melanogaster Species Group

The coevolutionary period of Wolbachia pipientis infecting Drosophila ananassae and its impact on the evolution of the host germline stem cell regulating genes

Evidence for Positive Selection on Drosophila melanogaster Seminal Fluid Protease Homologs

Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila

Maximum Likelihood Estimation of Ancestral Codon Usage Bias Parameters in Drosophila

Temporally Variable Selection on Proteolysis-Related Reproductive Tract Proteins in Drosophila

Positive darwinian selection promotes heterogeneity among members of the antifreeze protein multigene family

Patterns of Mutation and Selection at Synonymous Sites in Drosophila

Phylogenetic incongruence in the Drosophila melanogaster species group

Recurrent Positive Selection at Bgcn, a Key Determinant of Germ Line Differentiation, Does Not Appear to be Driven by Simple Coevolution with Its Partner Protein Bam

Inferring Selection in Partially Sequenced Regions

Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes

Positively Selected Disease Response Orthologous Gene Sets in the Cereals Identified Using Sorghum bicolor L. Moench Expression Profiles and Comparative Genomics

Microsatellite variation in colonizing and palearctic populations of Drosophila subobscura

Directional evolution of size coupled with ascertainment bias for variation in Drosophila microsatellites

The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster

Distribution and abundance of microsatellites in the yeast genome can Be explained by a balance between slippage events and point mutations

Polymorphism in abalone fertilization proteins is consistent with the neutral evolution of the egg's receptor for lysin (VERL) and positive darwinian selection of sperm lysin

Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans

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