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Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies

Nature methods, 2016-05, Vol.13 (5), p.443-445

2016

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Improved methods for multi-trait fine mapping of pleiotropic risk loci

Bioinformatics (Oxford, England), 2017-01, Vol.33 (2), p.248-255

2017

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Optimal algorithms for haplotype assembly from whole-genome sequence data

Bioinformatics, 2010-06, Vol.26 (12), p.i183-i190

2010

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Haplotype reconstruction from genotype data using Imperfect Phylogeny

Bioinformatics, 2004-08, Vol.20 (12), p.1842-1849

2004

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Mismatch string kernels for discriminative protein classification

Bioinformatics, 2004-03, Vol.20 (4), p.467-476

2004

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Finding associated variants in genome-wide association studies on multiple traits

Bioinformatics, 2018-07, Vol.34 (13), p.i467-i474

2018

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Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast

PLoS computational biology, 2009-03, Vol.5 (3), p.e1000311-e1000311

2009

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Improved linear mixed models for genome-wide association studies

Nature methods, 2012-06, Vol.9 (6), p.525-526

2012

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A Unifying Framework for Imputing Summary Statistics in Genome-Wide Association Studies

Journal of computational biology, 2020-03, Vol.27 (3), p.418-428

2020

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Identification of causal genes for complex traits

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i206-i213

2015

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Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies

Journal of computational biology, 2019-11, Vol.26 (11), p.1203-1213

2019

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Critical Assessment of Metagenome Interpretation: the second round of challenges

Nature methods, 2022-04, Vol.19 (4), p.429-440

2022

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Efficiently identifying significant associations in genome-wide association studies

Journal of computational biology, 2013-10, Vol.20 (10), p.817-830

2013

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Computational pan-genomics: status, promises and challenges

Briefings in bioinformatics, 2018-01, Vol.19 (1), p.118-135

2018

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Accurate viral population assembly from ultra-deep sequencing data

Bioinformatics (Oxford, England), 2014-06, Vol.30 (12), p.i329-i337

2014

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Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes

Bioinformatics (Oxford, England), 2017-07, Vol.33 (14), p.i67-i74

2017

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Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions

Journal of computational biology, 2019-01, Vol.26 (1), p.38-52

2019

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IPED2X: a robust pedigree reconstruction algorithm for complicated pedigrees

Journal of bioinformatics and computational biology, 2014-12, Vol.12 (6), p.1442007

2014

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Memory efficient assembly of human genome

Journal of bioinformatics and computational biology, 2015-04, Vol.13 (2), p.1550008

2015

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Incorporating prior information into association studies

Bioinformatics (Oxford, England), 2012-06, Vol.28 (12), p.i147-i153

2012

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Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation

Nature methods, 2017-03, Vol.14 (3), p.218-219

2017

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Packaging and containerization of computational methods

Nature protocols, 2024-09, Vol.19 (9), p.2529-2539

2024

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Using genomic annotations increases statistical power to detect eGenes

Bioinformatics, 2016-06, Vol.32 (12), p.i156-i163

2016

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Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data

Journal of computational biology, 2013-02, Vol.20 (2), p.80-92

2013

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Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

Journal of computational biology, 2017-06, Vol.24 (6), p.558-570

2017

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Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies

Improved methods for multi-trait fine mapping of pleiotropic risk loci

Optimal algorithms for haplotype assembly from whole-genome sequence data

Haplotype reconstruction from genotype data using Imperfect Phylogeny

Mismatch string kernels for discriminative protein classification

Finding associated variants in genome-wide association studies on multiple traits

Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast

Improved linear mixed models for genome-wide association studies

A Unifying Framework for Imputing Summary Statistics in Genome-Wide Association Studies

Identification of causal genes for complex traits

Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies

Critical Assessment of Metagenome Interpretation: the second round of challenges

Efficiently identifying significant associations in genome-wide association studies

Computational pan-genomics: status, promises and challenges

Accurate viral population assembly from ultra-deep sequencing data

Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes

Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions

IPED2X: a robust pedigree reconstruction algorithm for complicated pedigrees

Memory efficient assembly of human genome

Incorporating prior information into association studies

Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation

Packaging and containerization of computational methods

Using genomic annotations increases statistical power to detect eGenes

Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

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