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MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

PloS one, 2011-09, Vol.6 (9), p.e22594-e22594

2011

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Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

Molecular biology and evolution, 2013-09, Vol.30 (9), p.2134-2144

2013

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GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

Trends in genetics, 2009-01, Vol.25 (1), p.1-5

2009

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OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

BMC evolutionary biology, 2007-11, Vol.7 (1), p.241

2007

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Multiple molecular evidences for a living mammalian fossil

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (18), p.7495-7499

2007

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Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

PloS one, 2012-03, Vol.7 (3), p.e33852

2012

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Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

BMC bioinformatics, 2006-04, Vol.7 (1), p.188-188, Article 188

2006

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PhySIC_IST: cleaning source trees to infer more informative supertrees

BMC bioinformatics, 2008-10, Vol.9 (1), p.413-413, Article 413

2008

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Aligning Protein-Coding Nucleotide Sequences with MACSE

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2231, p.51

2021

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Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

Molecular ecology, 2012-09, Vol.12 (5), p.834-845

2012

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OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Molecular biology and evolution, 2019-04, Vol.36 (4), p.861-862

2019

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Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

Genome research, 2010-08, Vol.20 (8), p.1001-1009

2010

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Models, algorithms and programs for phylogeny reconciliation

Briefings in bioinformatics, 2011-09, Vol.12 (5), p.392-400

2011

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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

Nucleic acids research, 2024-01, Vol.52 (D1), p.D529-D535

2024

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OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals

Molecular biology and evolution, 2014-07, Vol.31 (7), p.1923-1928

2014

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Genomic evidence for large, long-lived ancestors to placental mammals

Molecular biology and evolution, 2013-01, Vol.30 (1), p.5-13

2013

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Efficient selection of branch-specific models of sequence evolution

Molecular biology and evolution, 2012-07, Vol.29 (7), p.1861-1874

2012

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PhySIC: A Veto Supertree Method with Desirable Properties

Systematic biology, 2007-10, Vol.56 (5), p.798-817

2007

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MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

Multiple molecular evidences for a living mammalian fossil

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

PhySIC_IST: cleaning source trees to infer more informative supertrees

Aligning Protein-Coding Nucleotide Sequences with MACSE

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

Models, algorithms and programs for phylogeny reconciliation

OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals

Genomic evidence for large, long-lived ancestors to placental mammals

Efficient selection of branch-specific models of sequence evolution

PhySIC: A Veto Supertree Method with Desirable Properties

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