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Nuclear organization of the genome and the potential for gene regulation

Nature, 2007-05, Vol.447 (7143), p.413-417

2007

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Transcription factories: genetic programming in three dimensions

Current opinion in genetics & development, 2012-04, Vol.22 (2), p.110-114

2012

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Cell-cycle dynamics of chromosomal organization at single-cell resolution

Nature (London), 2017-07, Vol.547 (7661), p.61-67

2017

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Long-range enhancer-promoter contacts in gene expression control

Nature reviews. Genetics, 2019-08, Vol.20 (8), p.437-455

2019

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Parental-to-embryo switch of chromosome organization in early embryogenesis

Nature (London), 2020-04, Vol.580 (7801), p.142-146

2020

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Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

Molecular cell, 2017-05, Vol.66 (3), p.420-435.e5

2017

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Comparison of Hi-C results using in-solution versus in-nucleus ligation

Genome Biology, 2015-08, Vol.16 (1), p.175-175, Article 175

2015

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The transcriptional interactome: gene expression in 3D

Current opinion in genetics & development, 2010-04, Vol.20 (2), p.127-133

2010

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Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition

Cell reports (Cambridge), 2018-03, Vol.22 (10), p.2615-2627

2018

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Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

Journal of visualized experiments, 2018-06 (136)

2018

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Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

Nature (London), 2009-07, Vol.460 (7253), p.410-413

2009

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No-Nonsense Functions for Long Noncoding RNAs

Cell, 2011-04, Vol.145 (2), p.178-181

2011

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Determinants of RNA quality from FFPE samples

PloS one, 2007-12, Vol.2 (12), p.e1261-e1261

2007

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

Nature genetics, 2010-01, Vol.42 (1), p.53-61

2010

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Allele-specific control of replication timing and genome organization during development

Genome research, 2018-06, Vol.28 (6), p.800-811

2018

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Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures

Genome research, 2018-03, Vol.28 (3), p.295-309

2018

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Gene regulation through nuclear organization

Nature structural & molecular biology, 2007-11, Vol.14 (11), p.1049-1055

2007

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Ultrastructural study of transcription factories in mouse erythroblasts

Journal of cell science, 2011-11, Vol.124 (Pt 21), p.3676-3683

2011

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Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape

Nature communications, 2023-06, Vol.14 (1), p.3844-3844, Article 3844

2023

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Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

PLoS biology, 2007-08, Vol.5 (8), p.e192

2007

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The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle

Genome Biology, 2021-06, Vol.22 (1), p.162-162, Article 162

2021

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Active genes dynamically colocalize to shared sites of ongoing transcription

Nature genetics, 2004-10, Vol.36 (10), p.1065-1071

2004

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Comparison of rider stability in a flapless saddle versus a conventional saddle

PloS one, 2018-06, Vol.13 (6), p.e0196960-e0196960

2018

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The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing

Development (Cambridge), 2009-02, Vol.136 (4), p.525-530

2009

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Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells

Genome Biology, 2018-09, Vol.19 (1), p.126-126, Article 126

2018

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Nuclear organization of the genome and the potential for gene regulation

Transcription factories: genetic programming in three dimensions

Cell-cycle dynamics of chromosomal organization at single-cell resolution

Long-range enhancer-promoter contacts in gene expression control

Parental-to-embryo switch of chromosome organization in early embryogenesis

Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

Comparison of Hi-C results using in-solution versus in-nucleus ligation

The transcriptional interactome: gene expression in 3D

Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

No-Nonsense Functions for Long Noncoding RNAs

Determinants of RNA quality from FFPE samples

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

Allele-specific control of replication timing and genome organization during development

Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures

Gene regulation through nuclear organization

Ultrastructural study of transcription factories in mouse erythroblasts

Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape

Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle

Active genes dynamically colocalize to shared sites of ongoing transcription

Comparison of rider stability in a flapless saddle versus a conventional saddle

The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing

Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells

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