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InterPro in 2022

Nucleic acids research, 2023-01, Vol.51 (D1), p.D418

2023

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CATH: increased structural coverage of functional space

Nucleic acids research, 2021-01, Vol.49 (D1), p.D266

2021

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CATH: expanding the horizons of structure-based functional annotations for genome sequences

Nucleic acids research, 2019-01, Vol.47 (D1), p.D280

2019

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Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

Bioinformatics, 2015-11, Vol.31 (21), p.3460-3467

2015

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Protein function annotation using protein domain family resources

Methods (San Diego, Calif.), 2016-01, Vol.93, p.24-34

2016

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Generating functional protein variants with variational autoencoders

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008736-e1008736

2021

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Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

PLoS computational biology, 2012-03, Vol.8 (3), p.e1002403-e1002403

2012

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Alpha Helices Are More Robust to Mutations than Beta Strands

PLoS computational biology, 2016-12, Vol.12 (12), p.e1005242-e1005242

2016

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Inferring function using patterns of native disorder in proteins

PLoS computational biology, 2007-08, Vol.3 (8), p.e162-e162

2007

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Domain-Based and Family-Specific Sequence Identity Thresholds Increase the Levels of Reliable Protein Function Transfer

Journal of molecular biology, 2009-03, Vol.387 (2), p.416-430

2009

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Biases in the experimental annotations of protein function and their effect on our understanding of protein function space

PLoS computational biology, 2013-05, Vol.9 (5), p.e1003063-e1003063

2013

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The complexity of protein interactions unravelled from structural disorder

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008546-e1008546

2021

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Structural Diversity of Domain Superfamilies in the CATH Database

Journal of molecular biology, 2006-07, Vol.360 (3), p.725-741

2006

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Quantitative profiling of protease specificity

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008101-e1008101

2021

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CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures

PLoS computational biology, 2007-11, Vol.3 (11), p.e232-e232

2007

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Exploring the composition of protein-ligand binding sites on a large scale

PLoS computational biology, 2013-11, Vol.9 (11), p.e1003321

2013

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Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

PLoS computational biology, 2015-12, Vol.11 (12), p.e1004659-e1004659

2015

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Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties

PLoS computational biology, 2016-05, Vol.12 (5), p.e1004936-e1004936

2016

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Diversity in protein domain superfamilies

Current opinion in genetics & development, 2015-12, Vol.35, p.40-49

2015

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Exploring fold space preferences of new-born and ancient protein superfamilies

PLoS computational biology, 2013-11, Vol.9 (11), p.e1003325-e1003325

2013

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The Classification of Protein Domains

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1525, p.137

2017

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One Fold with Many Functions: The Evolutionary Relationships between TIM Barrel Families Based on their Sequences, Structures and Functions

Journal of Molecular Biology, 2002-08, Vol.321 (5), p.741-765

2002

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Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data

PLoS computational biology, 2013-06, Vol.9 (6), p.e1003077-e1003077

2013

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Editorial overview: Sequences and topology: sequences, structures, genomes and populations

Current opinion in structural biology, 2014-06, Vol.26, p.vii-viii

2014

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InterPro in 2022

The InterPro protein families and domains database: 20 years on

CATH: increased structural coverage of functional space

CATH: expanding the horizons of structure-based functional annotations for genome sequences

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

Protein function annotation using protein domain family resources

Generating functional protein variants with variational autoencoders

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

Alpha Helices Are More Robust to Mutations than Beta Strands

Inferring function using patterns of native disorder in proteins

Domain-Based and Family-Specific Sequence Identity Thresholds Increase the Levels of Reliable Protein Function Transfer

Biases in the experimental annotations of protein function and their effect on our understanding of protein function space

The complexity of protein interactions unravelled from structural disorder

Structural Diversity of Domain Superfamilies in the CATH Database

Quantitative profiling of protease specificity

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures

Exploring the composition of protein-ligand binding sites on a large scale

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties

Diversity in protein domain superfamilies

Exploring fold space preferences of new-born and ancient protein superfamilies

The Classification of Protein Domains

One Fold with Many Functions: The Evolutionary Relationships between TIM Barrel Families Based on their Sequences, Structures and Functions

Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data

Editorial overview: Sequences and topology: sequences, structures, genomes and populations

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