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Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

PloS one, 2016-08, Vol.11 (8), p.e0160043-e0160043

2016

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EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering

PloS one, 2021-08, Vol.16 (8), p.e0255929-e0255929

2021

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MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

PloS one, 2011-09, Vol.6 (9), p.e22594-e22594

2011

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Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison

PloS one, 2018-12, Vol.13 (12), p.e0208838-e0208838

2018

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Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

PloS one, 2013-10, Vol.8 (10), p.e73667-e73667

2013

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Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

BMC bioinformatics, 2006-04, Vol.7 (1), p.188-188, Article 188

2006

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PhySIC_IST: cleaning source trees to infer more informative supertrees

BMC bioinformatics, 2008-10, Vol.9 (1), p.413-413, Article 413

2008

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Aligning Protein-Coding Nucleotide Sequences with MACSE

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2231, p.51

2021

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Models, algorithms and programs for phylogeny reconciliation

Briefings in bioinformatics, 2011-09, Vol.12 (5), p.392-400

2011

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Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

Journal of theoretical biology, 2017-11, Vol.432, p.1-13

2017

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USI: a fast and accurate approach for conceptual document annotation

BMC bioinformatics, 2015-03, Vol.16 (1), p.83-83, Article 83

2015

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Representing a set of reconciliations in a compact way

Journal of bioinformatics and computational biology, 2013-04, Vol.11 (2), p.1250025

2013

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Subontology Extraction Using Hyponym and Hypernym Closure on is-a Directed Acyclic Graphs

IEEE transactions on knowledge and data engineering, 2012-12, Vol.24 (12), p.2288-2300

2012

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IEEE_Xplore

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

BMC bioinformatics, 2015-11, Vol.16 (384), p.384-384, Article 384

2015

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SuperTriplets: a triplet-based supertree approach to phylogenomics

Bioinformatics, 2010-06, Vol.26 (12), p.i115-i123

2010

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Exploring the space of gene/species reconciliations with transfers

Journal of mathematical biology, 2015-11, Vol.71 (5), p.1179-1209

2015

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Inferring gene duplications, transfers and losses can be done in a discrete framework

Journal of mathematical biology, 2016-06, Vol.72 (7), p.1811-1844

2016

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Quartet-based phylogenetic inference: improvements and limits

Molecular biology and evolution, 2001-06, Vol.18 (6), p.1103-1116

2001

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Efficient selection of branch-specific models of sequence evolution

Molecular biology and evolution, 2012-07, Vol.29 (7), p.1861-1874

2012

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PhySIC: A Veto Supertree Method with Desirable Properties

Systematic biology, 2007-10, Vol.56 (5), p.798-817

2007

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Reconciliation and local gene tree rearrangement can be of mutual profit

Algorithms for molecular biology, 2013-04, Vol.8 (1), p.12-12, Article 12

2013

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Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison

Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

PhySIC_IST: cleaning source trees to infer more informative supertrees

Aligning Protein-Coding Nucleotide Sequences with MACSE

Models, algorithms and programs for phylogeny reconciliation

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

USI: a fast and accurate approach for conceptual document annotation

Representing a set of reconciliations in a compact way

Subontology Extraction Using Hyponym and Hypernym Closure on is-a Directed Acyclic Graphs

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

SuperTriplets: a triplet-based supertree approach to phylogenomics

Exploring the space of gene/species reconciliations with transfers

Inferring gene duplications, transfers and losses can be done in a discrete framework

Quartet-based phylogenetic inference: improvements and limits

Efficient selection of branch-specific models of sequence evolution

PhySIC: A Veto Supertree Method with Desirable Properties

Reconciliation and local gene tree rearrangement can be of mutual profit

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