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Systematic benchmarking of omics computational tools

Nature communications, 2019-03, Vol.10 (1), p.1393-1393, Article 1393

2019

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Metalign: efficient alignment-based metagenomic profiling via containment min hash

Genome Biology, 2020-09, Vol.21 (1), p.1-242, Article 242

2020

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Improving the usability and archival stability of bioinformatics software

Genome Biology, 2019-02, Vol.20 (1), p.47-47, Article 47

2019

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VISTA: an integrated framework for structural variant discovery

Briefings in bioinformatics, 2024-07, Vol.25 (5)

2024

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Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks

Nature communications, 2024-04, Vol.15 (1), p.2838-2838, Article 2838

2024

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Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

Nature communications, 2020-06, Vol.11 (1), p.3126-3126, Article 3126

2020

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A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese

Molecular biology and evolution, 2018-11, Vol.35 (11), p.2736-2750

2018

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Technology dictates algorithms: recent developments in read alignment

Genome Biology, 2021-08, Vol.22 (1), p.249-249, Article 249

2021

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Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX

Trends in biotechnology (Regular ed.), 2017-10, Vol.35 (10), p.901-903

2017

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Response to ‘comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing’ by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M

Briefings in bioinformatics, 2023-09, Vol.24 (6)

2023

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Large-scale integrative analysis of juvenile idiopathic arthritis for new insight into its pathogenesis

Arthritis research & therapy, 2024-02, Vol.26 (1), p.47-47, Article 47

2024

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Improving the completeness of public metadata accompanying omics studies

Genome Biology, 2021-04, Vol.22 (1), p.106-106, Article 106

2021

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Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity

Nature biotechnology, 2022-01, Vol.40 (1), p.133-137

2022

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MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

BMC genomics, 2019-06, Vol.20 (Suppl 5), p.423-423, Article 423

2019

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Genomic reproducibility in the bioinformatics era

Genome Biology, 2024-08, Vol.25 (1), p.213-15, Article 213

2024

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How bioinformatics and open data can boost basic science in countries and universities with limited resources

Nature biotechnology, 2019-03, Vol.37 (3), p.324-326

2019

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Challenges and recommendations to improve the installability and archival stability of omics computational tools

PLoS biology, 2019-06, Vol.17 (6), p.e3000333

2019

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Remote opportunities for scholars in Ukraine

Science (American Association for the Advancement of Science), 2022-12, Vol.378 (6626), p.1285-1286

2022

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Fasting-Mimicking Diet Inhibits Autophagy and Synergizes with Chemotherapy to Promote T-Cell-Dependent Leukemia-Free Survival

Cancers, 2023-12, Vol.15 (24), p.5870

2023

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RNA-seq data science: From raw data to effective interpretation

Frontiers in genetics, 2023-03, Vol.14, p.997383-997383

2023

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Estimation of alternative splicing isoform frequencies from RNA-Seq data

Algorithms for molecular biology, 2011-04, Vol.6 (1), p.9-9, Article 9

2011

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A comprehensive benchmarking of WGS-based deletion structural variant callers

Briefings in bioinformatics, 2022-07, Vol.23 (4)

2022

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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Genome Biology, 2023-05, Vol.24 (1), p.119-11, Article 119

2023

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Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

Nature communications, 2020-09, Vol.11 (1), p.1-1, Article 4499

2020

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Systematic benchmarking of omics computational tools

Metalign: efficient alignment-based metagenomic profiling via containment min hash

Improving the usability and archival stability of bioinformatics software

VISTA: an integrated framework for structural variant discovery

Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks

Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese

Technology dictates algorithms: recent developments in read alignment

Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX

Response to ‘comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing’ by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M

Large-scale integrative analysis of juvenile idiopathic arthritis for new insight into its pathogenesis

Improving the completeness of public metadata accompanying omics studies

Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

Genomic reproducibility in the bioinformatics era

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Challenges and recommendations to improve the installability and archival stability of omics computational tools

Unlocking capacities of genomics for the COVID-19 response and future pandemics

Remote opportunities for scholars in Ukraine

Fasting-Mimicking Diet Inhibits Autophagy and Synergizes with Chemotherapy to Promote T-Cell-Dependent Leukemia-Free Survival

RNA-seq data science: From raw data to effective interpretation

Estimation of alternative splicing isoform frequencies from RNA-Seq data

A comprehensive benchmarking of WGS-based deletion structural variant callers

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing

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