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Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme–ligand complexes

Journal of cheminformatics, 2024-10, Vol.16 (1), p.114-14, Article 114

2024

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Effects of sex and chronic neonatal nicotine treatment on Na2+ /K+ /Cl− co-transporter 1, K+ /Cl− co-transporter 2, brain-derived neurotrophic factor, NMDA receptor subunit 2A and NMDA receptor subunit 2B mRNA expression in the postnatal rat hippocampus

Neuroscience, 2012-12, Vol.225, p.105-117

2012

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α4β2∗ and α7 nicotinic acetylcholine receptor binding predicts choice preference in two cost benefit decision-making tasks

Neuroscience, 2013-01, Vol.230, p.121-131

2013

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The future for the application of fibroblast growth factor 2 in modern wound healing

Burns, 2023-03, Vol.49 (2), p.484-486

2023

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OP9: Collagen/Chitosan Dermal Substitute Enriched by Hyperstable FGF2: 4 Years of Development

Plastic and reconstructive surgery. Global open, 2022-01, Vol.10 (1S), p.6-6

2022

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CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

Bioinformatics, 2019-12, Vol.35 (23), p.4986-4993

2019

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HotSpot Wizard: a web server for identification of hot spots in protein engineering

Nucleic acids research, 2009-07, Vol.37 (Web Server issue), p.W376-W383

2009

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Analysis of transactivation capability and conformation of p53 temperature-dependent mutants and their reactivation by amifostine in yeast

Oncogene, 2008-02, Vol.27 (9), p.1243-1252

2008

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Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels

Acta crystallographica. Section D, Biological crystallography., 2010-09, Vol.66 (9), p.962-969

2010

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Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization

Computer graphics forum, 2019-06, Vol.38 (3), p.441-453

2019

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Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26

Biochemistry (Easton), 2000-11, Vol.39 (46), p.14082-14086

2000

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Molecular Dissection of Interactions between Rad51 and Members of the Recombination-Repair Group

Molecular and Cellular Biology, 2001-02, Vol.21 (3), p.966-976

2001

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Development of a Crystallization Protocol for the DbeA1 Variant of Novel Haloalkane Dehalogenase from Bradyrhizobium elkani USDA94

Crystal growth & design, 2011-02, Vol.11 (2), p.516-519

2011

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Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26

Applied and Environmental Microbiology, 1997-09, Vol.63 (9), p.3707-3710

1997

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Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

Journal of biotechnology, 2019-11, Vol.305, p.S72-S72

2019

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TRITON: in silico construction of protein mutants and prediction of their activities

Bioinformatics, 2000-09, Vol.16 (9), p.845-846

2000

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Analysis of the reaction mechanism and substrate specificity of haloalkane dehalogenases by sequential and structural comparisons

Protein engineering, 1999-11, Vol.12 (11), p.989-998

1999

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Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria

Applied and environmental microbiology, 2000, Vol.66 (1), p.219-222

2000

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Quantitative structure-function and structure-stability relationships of purposely modified proteins

Protein engineering, 1998-01, Vol.11 (1), p.21-30

Damborsky, J.

1998

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PKD2 mutations in a Czech population with autosomal dominant polycystic kidney disease

Nephrology, dialysis, transplantation, 2004-05, Vol.19 (5), p.1116-1122

2004

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Plectin repeats and modules: strategic cysteines and their presumed impact on cytolinker functions

BioEssays, 2001-11, Vol.23 (11), p.1064-1069

2001

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Computational site-directed mutagenesis of haloalkane dehalogenase in position 172

Protein engineering, 1998-10, Vol.11 (10), p.901-907

1998

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Novel germline BRCA1 and BRCA2 mutations in breast and breast/ovarian cancer families from the Czech Republic

Human mutation, 2001-12, Vol.18 (6), p.545-545

2001

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Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26

FEBS letters, 1999-03, Vol.446 (1), p.177-181

1999

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Effects of developmental nicotine exposure in rats on decision-making in adulthood

Behavioural pharmacology, 2012-02, Vol.23 (1), p.34-42

2012

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Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme–ligand complexes

Effects of sex and chronic neonatal nicotine treatment on Na2+ /K+ /Cl− co-transporter 1, K+ /Cl− co-transporter 2, brain-derived neurotrophic factor, NMDA receptor subunit 2A and NMDA receptor subunit 2B mRNA expression in the postnatal rat hippocampus

α4β2∗ and α7 nicotinic acetylcholine receptor binding predicts choice preference in two cost benefit decision-making tasks

The future for the application of fibroblast growth factor 2 in modern wound healing

OP9: Collagen/Chitosan Dermal Substitute Enriched by Hyperstable FGF2: 4 Years of Development

CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

HotSpot Wizard: a web server for identification of hot spots in protein engineering

Analysis of transactivation capability and conformation of p53 temperature-dependent mutants and their reactivation by amifostine in yeast

Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels

Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization

Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26

Molecular Dissection of Interactions between Rad51 and Members of the Recombination-Repair Group

Development of a Crystallization Protocol for the DbeA1 Variant of Novel Haloalkane Dehalogenase from Bradyrhizobium elkani USDA94

Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26

Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

TRITON: in silico construction of protein mutants and prediction of their activities

Analysis of the reaction mechanism and substrate specificity of haloalkane dehalogenases by sequential and structural comparisons

Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria

Quantitative structure-function and structure-stability relationships of purposely modified proteins

PKD2 mutations in a Czech population with autosomal dominant polycystic kidney disease

Plectin repeats and modules: strategic cysteines and their presumed impact on cytolinker functions

Computational site-directed mutagenesis of haloalkane dehalogenase in position 172

Novel germline BRCA1 and BRCA2 mutations in breast and breast/ovarian cancer families from the Czech Republic

Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26

Effects of developmental nicotine exposure in rats on decision-making in adulthood

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