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A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Cell reports (Cambridge), 2021-03, Vol.34 (11), p.108856-108856, Article 108856

2021

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Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

mAbs, 2022, Vol.14 (1), p.2008790

2022

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Individualized VDJ recombination predisposes the available Ig sequence space

Genome research, 2021-12, Vol.31 (12), p.2209-2224

2021

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In silico proof of principle of machine learning-based antibody design at unconstrained scale

mAbs, 2022, Vol.14 (1), p.2031482

2022

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Corrigendum: Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

Frontiers in immunology, 2024-02, Vol.15, p.1377041-1377041

2024

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Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

Frontiers in immunology, 2023, Vol.14, p.1265044-1265044

2023

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Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

Molecular systems design & engineering, 2019-08, Vol.4 (4), p.71-736

2019

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Biophysical cartography of the native and human-engineered antibody landscapes quantifies the plasticity of antibody developability

Communications biology, 2024-07, Vol.7 (1), p.922-25, Article 922

2024

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ALLO: A tool to discriminate and prioritize allosteric pockets

Chemical biology & drug design, 2018-04, Vol.91 (4), p.845-853

2018

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Evaluation of the nutritional quality of fermented cultivated Patin Surimi (Pangasius sutchi) with various salt concentration and fermentation time

BIO web of conferences, 2024, Vol.123, p.2002

2024

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Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study [version 2; peer review: 2 approved, 1 approved with reservations]

F1000 research, 2013, Vol.2, p.64-64

2013

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PENGELOLAAN INFORMASI PENYELENGGARAAN CONFERENCE TERPADU DI UIN AR-RANIRY BANDA ACEH DENGAN APLIKASI OPEN CONFERENCE SYSTEM (OCS)

Cyberspace (Banda Aceh), 2019-05, Vol.3 (1), p.57

2019

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Investigation on the Optimal Harvesting Time of Oil Palm Fruit

Jurnal teknik pertanian Lampung (Online), 2023-06, Vol.12 (2), p.524

2023

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Progress and challenges for the application of machine learning for neglected tropical diseases [version 1; peer review: 1 approved]

F1000 research, 2023, Vol.12, p.287

2023

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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Bioinformatics, 2020-06, Vol.36 (11), p.3594-3596

2020

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Machine learning and molecular simulation ascertain antimicrobial peptide against Klebsiella pneumoniae from public database

Computational biology and chemistry, 2023-02, Vol.102, p.107800, Article 107800

2023

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Predictability of antigen binding based on short motifs in the antibody CDRH3

Briefings in bioinformatics, 2024-09, Vol.25 (6)

2024

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Interorganelle Tethering to Endocytic Organelles Determines Directional Cytokine Transport in CD4 + T Cells

The Journal of immunology (1950), 2020-12, Vol.205 (11), p.2988-3000

2020

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Linguistically inspired roadmap for building biologically reliable protein language models

Nature machine intelligence, 2023-05, Vol.5 (5), p.485-496

2023

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ENRI: A tool for selecting structure‐based virtual screening target conformations

Chemical biology & drug design, 2017-05, Vol.89 (5), p.762-771

2017

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Changes in Chemical Composition and Rice Cooking Quality Through the Utilization of Respiration Heat of Freshly Harvested Rice During Storage

Journal of wetlands environmental management, 2017-07, Vol.5 (2), p.43-52

2017

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Linguistics-based formalization of the antibody language as a basis for antibody language models

Nature Computational Science, 2024-06, Vol.4 (6), p.412-422

2024

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Toward real-world automated antibody design with combinatorial Bayesian optimization

Cell reports methods, 2023-01, Vol.3 (1), p.100374, Article 100374

2023

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Collagen-Derived Cryptides: Machine-Learning Prediction and Molecular Dynamic Interaction Against Klebsiella pneumoniae Biofilm Synthesis Precursor

Malaysian applied biology, 2022-12, Vol.51 (5), p.59-75

2022

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Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction

Nature Computational Science, 2022-12, Vol.2 (12), p.845-865

2022

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A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

Individualized VDJ recombination predisposes the available Ig sequence space

In silico proof of principle of machine learning-based antibody design at unconstrained scale

Corrigendum: Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

Biophysical cartography of the native and human-engineered antibody landscapes quantifies the plasticity of antibody developability

ALLO: A tool to discriminate and prioritize allosteric pockets

Evaluation of the nutritional quality of fermented cultivated Patin Surimi (Pangasius sutchi) with various salt concentration and fermentation time

Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study [version 2; peer review: 2 approved, 1 approved with reservations]

PENGELOLAAN INFORMASI PENYELENGGARAAN CONFERENCE TERPADU DI UIN AR-RANIRY BANDA ACEH DENGAN APLIKASI OPEN CONFERENCE SYSTEM (OCS)

Investigation on the Optimal Harvesting Time of Oil Palm Fruit

Progress and challenges for the application of machine learning for neglected tropical diseases [version 1; peer review: 1 approved]

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Machine learning and molecular simulation ascertain antimicrobial peptide against Klebsiella pneumoniae from public database

Predictability of antigen binding based on short motifs in the antibody CDRH3

Interorganelle Tethering to Endocytic Organelles Determines Directional Cytokine Transport in CD4 + T Cells

Linguistically inspired roadmap for building biologically reliable protein language models

ENRI: A tool for selecting structure‐based virtual screening target conformations

Changes in Chemical Composition and Rice Cooking Quality Through the Utilization of Respiration Heat of Freshly Harvested Rice During Storage

Linguistics-based formalization of the antibody language as a basis for antibody language models

Toward real-world automated antibody design with combinatorial Bayesian optimization

Collagen-Derived Cryptides: Machine-Learning Prediction and Molecular Dynamic Interaction Against Klebsiella pneumoniae Biofilm Synthesis Precursor

Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction

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