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LoRDEC: accurate and efficient long read error correction

Bioinformatics (Oxford, England), 2014-12, Vol.30 (24), p.3506-3514

2014

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Accurate self-correction of errors in long reads using de Bruijn graphs

Bioinformatics (Oxford, England), 2017-03, Vol.33 (6), p.799-806

2017

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The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells

RNA biology, 2022, Vol.19 (1), p.132-142

2022

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FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell

Nature communications, 2021-03, Vol.12 (1), p.1716-1716, Article 1716

2021

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NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

Nature communications, 2019-07, Vol.10 (1), p.3072-12, Article 3072

2019

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Detecting microsatellites within genomes: significant variation among algorithms

BMC bioinformatics, 2007-04, Vol.8 (1), p.125-125, Article 125

2007

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Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model

PLoS computational biology, 2023-10, Vol.19 (10), p.e1011522-e1011522

2023

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Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite

PloS one, 2014-01, Vol.9 (1), p.e85021-e85021

2014

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FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

Malaria journal, 2023-01, Vol.22 (1), p.27-27, Article 27

2023

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STAR: an algorithm to Search for Tandem Approximate Repeats

Bioinformatics, 2004-11, Vol.20 (16), p.2812-2820

2004

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Reverse engineering of compact suffix trees and links: A novel algorithm

Journal of discrete algorithms (Amsterdam, Netherlands), 2014-09, Vol.28, p.9-22

2014

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Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

Malaria journal, 2017-12, Vol.16 (1), p.493-493, Article 493

2017

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Formation of the Arabidopsis Pentatricopeptide Repeat Family

Plant physiology (Bethesda), 2006-07, Vol.141 (3), p.825-839

2006

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Population genomics of picophytoplankton unveils novel chromosome hypervariability

Science advances, 2017-07, Vol.3 (7), p.e1700239-e1700239

2017

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Hierarchical Overlap Graph

Information processing letters, 2020-03, Vol.155, p.105862, Article 105862

2020

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Relationship between superstring and compression measures: New insights on the greedy conjecture

Discrete Applied Mathematics, 2018-08, Vol.245, p.59-64

2018

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Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

Nucleic acids research, 2009-08, Vol.37 (15), p.e104-e104

2009

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EPIK: precise and scalable evolutionary placement with informative k-mers

Bioinformatics (Oxford, England), 2023-12, Vol.39 (12)

2023

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Querying large read collections in main memory: a versatile data structure

BMC bioinformatics, 2011-06, Vol.12 (1), p.242-242, Article 242

2011

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dipwmsearch: a Python package for searching di-PWM motifs

Bioinformatics (Oxford, England), 2023-04, Vol.39 (4)

2023

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AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.3163-3165

2019

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The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings

Discrete Applied Mathematics, 2016-10, Vol.212, p.48-60

2016

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Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo)

BMC plant biology, 2010-02, Vol.10 (1), p.35-35, Article 35

2010

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PEWO: a collection of workflows to benchmark phylogenetic placement

Bioinformatics, 2020-11, Vol.36 (21), p.5264-5266

2020

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Hardness results for the center and median string problems under the weighted and unweighted edit distances

Journal of discrete algorithms (Amsterdam, Netherlands), 2005-06, Vol.3 (2), p.390-415

2005

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LoRDEC: accurate and efficient long read error correction

Accurate self-correction of errors in long reads using de Bruijn graphs

The multifaceted functions of the Fat mass and Obesity-associated protein (FTO) in normal and cancer cells

FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

Detecting microsatellites within genomes: significant variation among algorithms

Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite

FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species

STAR: an algorithm to Search for Tandem Approximate Repeats

Reverse engineering of compact suffix trees and links: A novel algorithm

Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

Formation of the Arabidopsis Pentatricopeptide Repeat Family

Population genomics of picophytoplankton unveils novel chromosome hypervariability

Hierarchical Overlap Graph

Relationship between superstring and compression measures: New insights on the greedy conjecture

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

EPIK: precise and scalable evolutionary placement with informative k-mers

Querying large read collections in main memory: a versatile data structure

dipwmsearch: a Python package for searching di-PWM motifs

AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees

The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings

Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo)

PEWO: a collection of workflows to benchmark phylogenetic placement

Hardness results for the center and median string problems under the weighted and unweighted edit distances

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