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IFF: Identifying key residues in intrinsically disordered regions of proteins using machine learning

Protein science, 2023-09, Vol.32 (9), p.e4739-n/a

2023

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Quantitative analysis of high‐throughput biological data

Wiley interdisciplinary reviews. Computational molecular science, 2023-07, Vol.13 (4), p.e1658-n/a

2023

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Identification of cell states using super-enhancer RNA

BMC genomics, 2021-11, Vol.22 (1), p.1-787, Article 787

2021

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DockCoV2: a drug database against SARS-CoV-2

Nucleic acids research, 2021-01, Vol.49 (D1), p.D1152-D1159

2021

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Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts

Briefings in bioinformatics, 2023-03, Vol.24 (2)

2023

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Ensemble learning model for identifying the hallmark genes of NFκB/TNF signaling pathway in cancers

Journal of translational medicine, 2023-07, Vol.21 (1), p.485-485, Article 485

2023

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Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation

BMC genomics, 2019-12, Vol.20 (Suppl 10), p.896-896, Article 896

2019

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MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach

Scientific reports, 2017-10, Vol.7 (1), p.13302-17, Article 13302

2017

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Identification and characterization of the lncRNA signature associated with overall survival in patients with neuroblastoma

Scientific reports, 2019-03, Vol.9 (1), p.5125-5125, Article 5125

2019

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Androgen pathway stimulates MicroRNA-216a transcription to suppress the tumor suppressor in lung cancer-1 gene in early hepatocarcinogenesis

Hepatology (Baltimore, Md.), 2012-08, Vol.56 (2), p.632-643

2012

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Bacterial Composition and Diversity in Breast Milk Samples from Mothers Living in Taiwan and Mainland China

Frontiers in microbiology, 2017-05, Vol.8, p.965-965

2017

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ValidNESs: a database of validated leucine-rich nuclear export signals

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D338-D343

2013

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Discovery of biomarkers for gastric cancer: A proteomics approach

Journal of proteomics, 2012-06, Vol.75 (11), p.3081-3097

2012

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Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis

BMC genomics, 2015-07, Vol.16 (1), p.533-533, Article 533

2015

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Thymic macrophages consist of two populations with distinct localization and origin

eLife, 2022-11, Vol.11

2022

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Quantitative Phosphoproteomics Reveals Cell Alignment and Mitochondrial Length Change under Cyclic Stretching in Lung Cells

International journal of molecular sciences, 2020-06, Vol.21 (11), p.4074

2020

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Stratification of lncRNA modulation networks in breast cancer

BMC medical genomics, 2022-05, Vol.14 (Suppl 3), p.300-300, Article 300

2022

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Characterization of microRNA-regulated protein-protein interaction network

Proteomics (Weinheim), 2008-05, Vol.8 (10), p.1975-1979

2008

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BI-2536 Promotes Neuroblastoma Cell Death via Minichromosome Maintenance Complex Components 2 and 10

Pharmaceuticals (Basel, Switzerland), 2021-12, Vol.15 (1), p.37

2021

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Modular signature of long non-coding RNA association networks as a prognostic biomarker in lung cancer

BMC medical genomics, 2021-12, Vol.14 (Suppl 3), p.290-290, Article 290

2021

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Coregulation of transcription factors and microRNAs in human transcriptional regulatory network

BMC bioinformatics, 2011-02, Vol.12 Suppl 1 (S1), p.S41-S41, Article S41

2011

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ZNF322A-mediated protein phosphorylation induces autophagosome formation through modulation of IRS1-AKT glucose uptake and HSP-elicited UPR in lung cancer

Journal of biomedical science, 2020-06, Vol.27 (1), p.1-75, Article 75

2020

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Revealing the molecular mechanism of gastric cancer marker annexin A4 in cancer cell proliferation using exon arrays

PloS one, 2012-09, Vol.7 (9), p.e44615

2012

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Methylomic analysis identifies frequent DNA methylation of zinc finger protein 582 (ZNF582) in cervical neoplasms

PloS one, 2012-07, Vol.7 (7), p.e41060-e41060

2012

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A Single-Cell Network-Based Drug Repositioning Strategy for Post-COVID-19 Pulmonary Fibrosis

Pharmaceutics, 2022-04, Vol.14 (5), p.971

2022

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IFF: Identifying key residues in intrinsically disordered regions of proteins using machine learning

Quantitative analysis of high‐throughput biological data

Identification of cell states using super-enhancer RNA

DockCoV2: a drug database against SARS-CoV-2

Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts

Ensemble learning model for identifying the hallmark genes of NFκB/TNF signaling pathway in cancers

Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation

MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach

Identification and characterization of the lncRNA signature associated with overall survival in patients with neuroblastoma

Androgen pathway stimulates MicroRNA-216a transcription to suppress the tumor suppressor in lung cancer-1 gene in early hepatocarcinogenesis

Bacterial Composition and Diversity in Breast Milk Samples from Mothers Living in Taiwan and Mainland China

ValidNESs: a database of validated leucine-rich nuclear export signals

Discovery of biomarkers for gastric cancer: A proteomics approach

Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis

Thymic macrophages consist of two populations with distinct localization and origin

Quantitative Phosphoproteomics Reveals Cell Alignment and Mitochondrial Length Change under Cyclic Stretching in Lung Cells

Stratification of lncRNA modulation networks in breast cancer

Characterization of microRNA-regulated protein-protein interaction network

BI-2536 Promotes Neuroblastoma Cell Death via Minichromosome Maintenance Complex Components 2 and 10

Modular signature of long non-coding RNA association networks as a prognostic biomarker in lung cancer

Coregulation of transcription factors and microRNAs in human transcriptional regulatory network

ZNF322A-mediated protein phosphorylation induces autophagosome formation through modulation of IRS1-AKT glucose uptake and HSP-elicited UPR in lung cancer

Revealing the molecular mechanism of gastric cancer marker annexin A4 in cancer cell proliferation using exon arrays

Methylomic analysis identifies frequent DNA methylation of zinc finger protein 582 (ZNF582) in cervical neoplasms

A Single-Cell Network-Based Drug Repositioning Strategy for Post-COVID-19 Pulmonary Fibrosis

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