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Mapping RNA‐seq Reads with STAR

Current Protocols in Bioinformatics, 2015-09, Vol.51 (1), p.11.14.1-11.14.19

2015

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Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

The EMBO journal, 2014-05, Vol.33 (9), p.981-993

2014

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An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

The EMBO journal, 2012-10, Vol.31 (20), p.4005-4019

2012

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power and promise of RNA‐seq in ecology and evolution

Molecular ecology, 2016-03, Vol.25 (6), p.1224-1241

2016

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Small RNAs containing the pathogenic determinant of a chloroplast‐replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing

The Plant journal : for cell and molecular biology, 2012-06, Vol.70 (6), p.991-1003

2012

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Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

The Plant journal : for cell and molecular biology, 2012-02, Vol.69 (3), p.462-474

2012

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The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

Environmental microbiology, 2015-08, Vol.17 (8), p.2882-2895

2015

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DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli

Molecular microbiology, 2015-10, Vol.98 (2), p.357-369

2015

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High‐throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

Plant biotechnology journal, 2014-04, Vol.12 (3), p.354-366

2014

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Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

Environmental microbiology, 2015-08, Vol.17 (8), p.2805-2823

2015

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Host‐induced post‐transcriptional hairpin RNA‐mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana

Plant biotechnology journal, 2014-06, Vol.12 (5), p.541-553

2014

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A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159

The EMBO journal, 2009-12, Vol.28 (23), p.3646-3656

2009

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Small RNA sequencing identifies miRNA roles in ovule and fibre development

Plant biotechnology journal, 2015-04, Vol.13 (3), p.355-369

2015

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Computational identification of novel microRNAs and targets in Brassica napus

FEBS letters, 2007-04, Vol.581 (7), p.1464-1474

2007

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liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants

The New phytologist, 2015-04, Vol.206 (1), p.352-367

2015

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extended single‐index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

Journal of basic microbiology, 2016-03, Vol.56 (3), p.321-326

2016

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CMOS-Compatible Silicon Nanowire Field-Effect Transistors for Ultrasensitive and Label-Free MicroRNAs Sensing

Small (Weinheim an der Bergstrasse, Germany), 2014-05, Vol.10 (10), p.2022-2028

2014

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Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

FEMS microbiology ecology, 2014-02, Vol.87 (2), p.378-389

2014

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Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited

Environmental microbiology, 2012-02, Vol.14 (2), p.291-317

2012

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Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot‐specific NADPH oxidase

The Plant journal : for cell and molecular biology, 2014-09, Vol.79 (5), p.729-740

2014

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MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries

Stem cells (Dayton, Ohio), 2008-10, Vol.26 (10), p.2496-2505

2008

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Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis

Physiologia plantarum, 2012-12, Vol.146 (4), p.388-403

2012

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Whole Transcriptome Analysis of the Coral Acropora millepora Reveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

Molecular ecology, 2012-05, Vol.21 (10), p.2440-2454

2012

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Transcriptional repression by MYB3R proteins regulates plant organ growth

The EMBO journal, 2015-08, Vol.34 (15), p.1992-2007

2015

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Regulation of the alkaloid biosynthesis by miRNA in opium poppy

Plant biotechnology journal, 2015-04, Vol.13 (3), p.409-420

2015

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Mapping RNA‐seq Reads with STAR

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

power and promise of RNA‐seq in ecology and evolution

Small RNAs containing the pathogenic determinant of a chloroplast‐replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli

High‐throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

Host‐induced post‐transcriptional hairpin RNA‐mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana

A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159

Small RNA sequencing identifies miRNA roles in ovule and fibre development

Computational identification of novel microRNAs and targets in Brassica napus

liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants

extended single‐index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

CMOS-Compatible Silicon Nanowire Field-Effect Transistors for Ultrasensitive and Label-Free MicroRNAs Sensing

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited

Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot‐specific NADPH oxidase

MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis

Whole Transcriptome Analysis of the Coral Acropora millepora Reveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

Transcriptional repression by MYB3R proteins regulates plant organ growth

Regulation of the alkaloid biosynthesis by miRNA in opium poppy

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