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Utility of next-generation RNA-sequencing in identifying chimeric transcription involving human endogenous retroviruses

APMIS : acta pathologica, microbiologica et immunologica Scandinavica, 2016-01, Vol.124 (1-2), p.127-139

2016

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Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

Environmental microbiology, 2012-02, Vol.14 (2), p.285-290

2012

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The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

Environmental microbiology, 2015-08, Vol.17 (8), p.2882-2895

2015

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Inactivation of RNase P in Escherichia coli significantly changes post‐transcriptional RNA metabolism

Molecular microbiology, 2022-01, Vol.117 (1), p.121-142

2022

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DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli

Molecular microbiology, 2015-10, Vol.98 (2), p.357-369

2015

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Molecular characterization of SARS-CoV-2 in the first COVID-19 cluster in France reveals an amino acid deletion in nsp2 (Asp268del)

Clinical microbiology and infection, 2020-07, Vol.26 (7), p.960-962

2020

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RNA-Seq reveals virus–virus and virus–plant interactions in nature

FEMS microbiology ecology, 2016-11, Vol.92 (11), p.1

2016

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Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

Environmental microbiology, 2015-08, Vol.17 (8), p.2805-2823

2015

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ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

Environmental microbiology, 2010-11, Vol.12 (11), p.2885-2893

2010

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Spatial structuring of bacterial communities within individual Ginkgo biloba trees

Environmental microbiology, 2015-07, Vol.17 (7), p.2352-2361

2015

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Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1‐positive Crassostrea gigas

Environmental microbiology, 2015-11, Vol.17 (11), p.4200-4212

2015

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Eimeria falciformis extracellular vesicles differentially express host cell lncRNAs

The Journal of eukaryotic microbiology, 2024-03, Vol.71 (2), p.e13009-e13009

2024

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extended single‐index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

Journal of basic microbiology, 2016-03, Vol.56 (3), p.321-326

2016

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Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats

FEMS microbiology ecology, 2011-05, Vol.76 (2), p.301-310

2011

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Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

FEMS microbiology ecology, 2014-02, Vol.87 (2), p.378-389

2014

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Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited

Environmental microbiology, 2012-02, Vol.14 (2), p.291-317

2012

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Next generation sequencing of microbial transcriptomes: challenges and opportunities

FEMS microbiology letters, 2010, Vol.302 (1), p.1-7

van Vliet, Arnoud H.M

2010

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Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis

Physiologia plantarum, 2012-12, Vol.146 (4), p.388-403

2012

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Microbial diversity and stratification of South Pacific abyssal marine sediments

Environmental microbiology, 2011-12, Vol.13 (12), p.3219-3234

2011

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Long‐read direct RNA sequencing of the mitochondrial transcriptome of Saccharomyces cerevisiae reveals condition‐dependent intron abundance

Yeast (Chichester, England), 2024-04, Vol.41 (4), p.256-278

2024

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Transcriptome Analysis Identifies Plasmodiophora brassicae Secondary Infection Effector Candidates

The Journal of eukaryotic microbiology, 2020-05, Vol.67 (3), p.337-351

2020

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A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys

FEMS microbiology ecology, 2016-02, Vol.92 (2), p.1

2016

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Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa

Environmental microbiology, 2012-08, Vol.14 (8), p.2006-2016

2012

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Characterisation of worldwide Helicobacter pylori strains reveals genetic conservation and essentiality of serine protease HtrA

Molecular microbiology, 2016-03, Vol.99 (5), p.925-944

2016

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Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons

FEMS microbiology letters, 2012-01, Vol.326 (1), p.62-68

2012

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Utility of next-generation RNA-sequencing in identifying chimeric transcription involving human endogenous retroviruses

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

Inactivation of RNase P in Escherichia coli significantly changes post‐transcriptional RNA metabolism

DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli

Molecular characterization of SARS-CoV-2 in the first COVID-19 cluster in France reveals an amino acid deletion in nsp2 (Asp268del)

RNA-Seq reveals virus–virus and virus–plant interactions in nature

Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

Spatial structuring of bacterial communities within individual Ginkgo biloba trees

Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1‐positive Crassostrea gigas

Eimeria falciformis extracellular vesicles differentially express host cell lncRNAs

extended single‐index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited

Next generation sequencing of microbial transcriptomes: challenges and opportunities

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis

Microbial diversity and stratification of South Pacific abyssal marine sediments

Long‐read direct RNA sequencing of the mitochondrial transcriptome of Saccharomyces cerevisiae reveals condition‐dependent intron abundance

Transcriptome Analysis Identifies Plasmodiophora brassicae Secondary Infection Effector Candidates

A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys

Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa

Characterisation of worldwide Helicobacter pylori strains reveals genetic conservation and essentiality of serine protease HtrA

Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons

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