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RNA‐Seq Read Alignments with PALMapper

Current Protocols in Bioinformatics, 2010-12, Vol.32 (1), p.11.6.1-11.6.37

2010

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Mapping RNA‐seq Reads with STAR

Current Protocols in Bioinformatics, 2015-09, Vol.51 (1), p.11.14.1-11.14.19

2015

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Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

The EMBO journal, 2014-05, Vol.33 (9), p.981-993

2014

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ZKSCAN1 gene and its related circular RNA (circZKSCAN1) both inhibit hepatocellular carcinoma cell growth, migration, and invasion but through different signaling pathways

Molecular oncology, 2017-04, Vol.11 (4), p.422-437

2017

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An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

The EMBO journal, 2012-10, Vol.31 (20), p.4005-4019

2012

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Human milk exosomes and their microRNAs survive digestion in vitro and are taken up by human intestinal cells

Molecular nutrition & food research, 2017-11, Vol.61 (11), p.n/a

2017

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Small RNAs containing the pathogenic determinant of a chloroplast‐replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing

The Plant journal : for cell and molecular biology, 2012-06, Vol.70 (6), p.991-1003

2012

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Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

The Plant journal : for cell and molecular biology, 2012-02, Vol.69 (3), p.462-474

2012

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The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

Environmental microbiology, 2015-08, Vol.17 (8), p.2882-2895

2015

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Effects of RNA integrity on transcript quantification by total RNA sequencing of clinically collected human placental samples

The FASEB journal, 2017-08, Vol.31 (8), p.3298-3308

2017

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Designing a transcriptome next-generation sequencing project for a nonmodel plant species

American journal of botany, 2012-02, Vol.99 (2), p.257-266

2012

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The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis

The New phytologist, 2016-10, Vol.212 (2), p.345-353

2016

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DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli

Molecular microbiology, 2015-10, Vol.98 (2), p.357-369

2015

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Molecular characterization of SARS-CoV-2 in the first COVID-19 cluster in France reveals an amino acid deletion in nsp2 (Asp268del)

Clinical microbiology and infection, 2020-07, Vol.26 (7), p.960-962

2020

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Thioguanosine Conversion Enables mRNA‐Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC‐seq DUAL)

Angewandte Chemie (International ed.), 2020-04, Vol.59 (17), p.6881-6886

International ed. in English, 2020

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Single-Cell RNA Sequencing Technology Landscape in 2023

Stem cells (Dayton, Ohio), 2024-01, Vol.42 (1), p.1

2024

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Characterization of circular RNAs landscape in multiple system atrophy brain

Journal of neurochemistry, 2016-11, Vol.139 (3), p.485-496

2016

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Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal

Plant, cell and environment, 2012-01, Vol.35 (1), p.86-99

2012

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RNA-Seq reveals virus–virus and virus–plant interactions in nature

FEMS microbiology ecology, 2016-11, Vol.92 (11), p.1

2016

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High‐throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

Plant biotechnology journal, 2014-04, Vol.12 (3), p.354-366

2014

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Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

Environmental microbiology, 2015-08, Vol.17 (8), p.2805-2823

2015

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Host‐induced post‐transcriptional hairpin RNA‐mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana

Plant biotechnology journal, 2014-06, Vol.12 (5), p.541-553

2014

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comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

American journal of botany, 2012-02, Vol.99 (2), p.248-256

2012

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Novel YAP1-TFE3 fusion defines a distinct subset of epithelioid hemangioendothelioma

Genes chromosomes & cancer, 2013-08, Vol.52 (8), p.775-784

2013

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Small RNA sequencing identifies miRNA roles in ovule and fibre development

Plant biotechnology journal, 2015-04, Vol.13 (3), p.355-369

2015

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RNA‐Seq Read Alignments with PALMapper

Mapping RNA‐seq Reads with STAR

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

ZKSCAN1 gene and its related circular RNA (circZKSCAN1) both inhibit hepatocellular carcinoma cell growth, migration, and invasion but through different signaling pathways

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

Human milk exosomes and their microRNAs survive digestion in vitro and are taken up by human intestinal cells

Small RNAs containing the pathogenic determinant of a chloroplast‐replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

Effects of RNA integrity on transcript quantification by total RNA sequencing of clinically collected human placental samples

Designing a transcriptome next-generation sequencing project for a nonmodel plant species

The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis

DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli

Molecular characterization of SARS-CoV-2 in the first COVID-19 cluster in France reveals an amino acid deletion in nsp2 (Asp268del)

Thioguanosine Conversion Enables mRNA‐Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC‐seq DUAL)

Single-Cell RNA Sequencing Technology Landscape in 2023

Characterization of circular RNAs landscape in multiple system atrophy brain

Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal

RNA-Seq reveals virus–virus and virus–plant interactions in nature

High‐throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

Host‐induced post‐transcriptional hairpin RNA‐mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana

comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

Novel YAP1-TFE3 fusion defines a distinct subset of epithelioid hemangioendothelioma

Small RNA sequencing identifies miRNA roles in ovule and fibre development

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