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DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification

Science (American Association for the Advancement of Science), 2017-02, Vol.355 (6326), p.752-756

2017

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Temperature-Tolerant COLD-PCR Reduces Temperature Stringency and Enables Robust Mutation Enrichment

Clinical chemistry (Baltimore, Md.), 2012-07, Vol.58 (7), p.1130-1138

2012

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Terminally differentiated muscle cells are defective in base excision DNA repair and hypersensitive to oxygen injury

Proceedings of the National Academy of Sciences - PNAS, 2007-10, Vol.104 (43), p.17010-17015

2007

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CEACAM1-4S, a Cell-Cell Adhesion Molecule, Mediates Apoptosis and Reverts Mammary Carcinoma Cells to a Normal Morphogenic Phenotype in a 3D Culture

Proceedings of the National Academy of Sciences - PNAS, 2003-01, Vol.100 (2), p.521-526

2003

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Mechanisms of Base Selection by the Escherichia coli Mispaired Uracil Glycosylase

The Journal of biological chemistry, 2008-04, Vol.283 (14), p.8829-8836

2008

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Abstract 3526: Incorporation of unique molecular identifiers (UMIs) into unique dual sample indexing (UDI) improves the accuracy of quantitative next generation sequencing

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.3526-3526

2019

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Abstract 4046: Immune repertoire sequencing reveals tumor microenvironment and tracks clonally expanded B cell and T cell in blood

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.4046-4046

2019

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Abstract 326: Matched fresh frozen and FFPE patient tissues reveal the enhanced sensitivity and data quality of a novel DNA library prep method

Cancer research (Chicago, Ill.), 2024-03, Vol.84 (6_Supplement), p.326-326

2024

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Response to Comment on "DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification"

Science (American Association for the Advancement of Science), 2018-09, Vol.361 (6409)

2018

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Abstract 5360: DNA repair increases sequencing accuracy without altering actual mutation frequency in clinical samples

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.5360-5360

2017

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Abstract 4675: B-cell and T-cell repertoire sequencing enables somatic hypermutation and minimal residual disease assessment

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.4675-4675

2018

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Abstract 1425: A multi-enzyme DNA repair mix improves library quality and sequencing accuracy in FFPE tumor samples

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.1425-1425

2018

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Abstract 3304: Immune repertoire sequencing enables accurate clonality determination

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.3304-3304

2023

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Abstract 3522: Enzymatic DNA repair enables high quality library preparation and accurate sequencing from highly damaged DNA inputs

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.3522-3522

2019

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Abstract 3528: Novel enzymatic DNA fragmentation integrated into library construction

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.3528-3528

2019

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Differential strand separation at critical temperature: a minimally disruptive enrichment method for low-abundance unknown DNA mutations

Nucleic acids research, 2013-02, Vol.41 (3), p.e50-e50

2013

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Abstract 5628: Immune repertoire sequencing facilitates gamma delta T cell clonal determination

Cancer research (Chicago, Ill.), 2022-06, Vol.82 (12_Supplement), p.5628-5628

2022

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Abstract 4886: Repair of challenging FFPE DNA improves library success rate and sequencing quality

Cancer research (Chicago, Ill.), 2015-08, Vol.75 (15_Supplement), p.4886-4886

2015

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Abstract 249: A novel suite of enzyme mixes enable robust hybrid capture sequencing from low quality FFPE DNA

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.249-249

2023

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Abstract 5365: Combining enzymatic DNA fragmentation with NGS library construction results in high quality, high yield libraries

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.5365-5365

2017

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Abstract 5406: Low-input transcript profiling with enhanced sensitivity using a highly efficient, low-bias and strand-specific RNA-Seq library preparation method

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.5406-5406

2017

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Abstract 3620: Enhancing clinical utility of NGS with reduced bias, low DNA input, library construction

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.3620-3620

2016

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Abstract 3628: Improving sequencing quality of libraries prepared from FFPE DNA

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.3628-3628

2016

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Abstract 5784: Overcoming FFPE hurdles to enable high quality hybrid capture libraries and somatic mutation detection in matched tumor-normal patient samples

Cancer research (Chicago, Ill.), 2022-06, Vol.82 (12_Supplement), p.5784-5784

2022

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Multiplex Amplification Coupled with COLD-PCR and High Resolution Melting Enables Identification of Low-Abundance Mutations in Cancer Samples with Low DNA Content

The Journal of molecular diagnostics : JMD, 2011-03, Vol.13 (2), p.220-232

2011

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DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification

Temperature-Tolerant COLD-PCR Reduces Temperature Stringency and Enables Robust Mutation Enrichment

Terminally differentiated muscle cells are defective in base excision DNA repair and hypersensitive to oxygen injury

CEACAM1-4S, a Cell-Cell Adhesion Molecule, Mediates Apoptosis and Reverts Mammary Carcinoma Cells to a Normal Morphogenic Phenotype in a 3D Culture

Mechanisms of Base Selection by the Escherichia coli Mispaired Uracil Glycosylase

Abstract 3526: Incorporation of unique molecular identifiers (UMIs) into unique dual sample indexing (UDI) improves the accuracy of quantitative next generation sequencing

Abstract 4046: Immune repertoire sequencing reveals tumor microenvironment and tracks clonally expanded B cell and T cell in blood

Abstract 326: Matched fresh frozen and FFPE patient tissues reveal the enhanced sensitivity and data quality of a novel DNA library prep method

Response to Comment on "DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification"

Abstract 5360: DNA repair increases sequencing accuracy without altering actual mutation frequency in clinical samples

Abstract 4675: B-cell and T-cell repertoire sequencing enables somatic hypermutation and minimal residual disease assessment

Abstract 1425: A multi-enzyme DNA repair mix improves library quality and sequencing accuracy in FFPE tumor samples

Abstract 3304: Immune repertoire sequencing enables accurate clonality determination

Abstract 3522: Enzymatic DNA repair enables high quality library preparation and accurate sequencing from highly damaged DNA inputs

Abstract 3528: Novel enzymatic DNA fragmentation integrated into library construction

Differential strand separation at critical temperature: a minimally disruptive enrichment method for low-abundance unknown DNA mutations

Abstract 5628: Immune repertoire sequencing facilitates gamma delta T cell clonal determination

Abstract 4886: Repair of challenging FFPE DNA improves library success rate and sequencing quality

Abstract 249: A novel suite of enzyme mixes enable robust hybrid capture sequencing from low quality FFPE DNA

Abstract 5365: Combining enzymatic DNA fragmentation with NGS library construction results in high quality, high yield libraries

Abstract 5406: Low-input transcript profiling with enhanced sensitivity using a highly efficient, low-bias and strand-specific RNA-Seq library preparation method

Abstract 3620: Enhancing clinical utility of NGS with reduced bias, low DNA input, library construction

Abstract 3628: Improving sequencing quality of libraries prepared from FFPE DNA

Abstract 5784: Overcoming FFPE hurdles to enable high quality hybrid capture libraries and somatic mutation detection in matched tumor-normal patient samples

Multiplex Amplification Coupled with COLD-PCR and High Resolution Melting Enables Identification of Low-Abundance Mutations in Cancer Samples with Low DNA Content

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