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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

Nature genetics, 2014-02, Vol.46 (2), p.205-212

2014

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Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers

Nucleic acids research, 2021-03, Vol.49 (5), p.2488-2508

2021

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Single-cell technologies meet Hi-C

Nature genetics, 2024-08, Vol.56 (8), p.1542-1543

2024

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Multiplexed analysis of chromosome conformation at vastly improved sensitivity

Nature methods, 2016-01, Vol.13 (1), p.74-80

2016

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Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus

Nature genetics, 2021-11, Vol.53 (11), p.1606-1615

2021

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Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element

Genes & development, 2017-08, Vol.31 (16), p.1704-1713

2017

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A genome-editing strategy to treat β-hemoglobinopathies that recapitulates a mutation associated with a benign genetic condition

Nature medicine, 2016-09, Vol.22 (9), p.987-990

2016

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DeepC: predicting 3D genome folding using megabase-scale transfer learning

Nature methods, 2020-11, Vol.17 (11), p.1118-1124

2020

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Defining genome architecture at base-pair resolution

Nature (London), 2021-07, Vol.595 (7865), p.125-129

2021

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How best to identify chromosomal interactions: a comparison of approaches

Nature methods, 2017-02, Vol.14 (2), p.125-134

2017

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The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist

Nature genetics, 2019-06, Vol.51 (6), p.1024-1034

2019

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DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease

Proceedings of the National Academy of Sciences - PNAS, 2017-09, Vol.114 (36), p.E7526-E7535

2017

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Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains

Nature genetics, 2018-12, Vol.50 (12), p.1744-1751

2018

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Genetic dissection of the α-globin super-enhancer in vivo

Nature genetics, 2016-08, Vol.48 (8), p.895-903

2016

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Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models

Genome Biology, 2016-03, Vol.17 (1), p.59-59, Article 59

2016

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Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells

Genome research, 2010-08, Vol.20 (8), p.1064-1083

2010

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CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data

Journal of visualized experiments, 2023-09 (199)

2023

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Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints

Genome research, 2017-10, Vol.27 (10), p.1730-1742

2017

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Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C

Nucleic acids research, 2017-12, Vol.45 (22), p.e184-e184

2017

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An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

Genome research, 2020-03, Vol.30 (3), p.472-484

2020

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Regulatory SNP Causes a Human Genetic Disease by Creating a New Transcriptional Promoter

Science (American Association for the Advancement of Science), 2006-05, Vol.312 (5777), p.1215-1217

2006

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Functional characterisation of cis -regulatory elements governing dynamic Eomes expression in the early mouse embryo

Development (Cambridge), 2017-04, Vol.144 (7), p.1249-1260

2017

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Between form and function: the complexity of genome folding

Human molecular genetics, 2017-10, Vol.26 (R2), p.R208-R215

2017

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Adventitious changes in long-range gene expression caused by polymorphic structural variation and promoter competition

Proceedings of the National Academy of Sciences - PNAS, 2009-12, Vol.106 (51), p.21771-21776

2009

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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers

Single-cell technologies meet Hi-C

Multiplexed analysis of chromosome conformation at vastly improved sensitivity

Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus

Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element

A genome-editing strategy to treat β-hemoglobinopathies that recapitulates a mutation associated with a benign genetic condition

DeepC: predicting 3D genome folding using megabase-scale transfer learning

Defining genome architecture at base-pair resolution

How best to identify chromosomal interactions: a comparison of approaches

The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist

DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains

Genetic dissection of the α-globin super-enhancer in vivo

Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models

Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells

CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data

Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints

Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

Regulatory SNP Causes a Human Genetic Disease by Creating a New Transcriptional Promoter

Functional characterisation of cis -regulatory elements governing dynamic Eomes expression in the early mouse embryo

Between form and function: the complexity of genome folding

Adventitious changes in long-range gene expression caused by polymorphic structural variation and promoter competition

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