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The PSIPRED Protein Analysis Workbench: 20 years on

Nucleic acids research, 2019-07, Vol.47 (W1), p.W402

2019

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Transcriptional and Spatial Resolution of Cell Types in the Mammalian Habenula

Neuron (Cambridge, Mass.), 2020-06, Vol.106 (5), p.743-758.e5

2020

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Identification of hub genes and construction of transcriptional regulatory network for the progression of colon adenocarcinoma hub genes and TF regulatory network of colon adenocarcinoma

Journal of cellular physiology, 2020-03, Vol.235 (3), p.2037-2048

2020

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Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways

Genetics (Austin), 2023-10, Vol.225 (2)

2023

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NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology

BMC bioinformatics, 2017-03, Vol.18 (1), p.177-177, Article 177

2017

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Gene Ontology representation for transcription factor functions

Biochimica et biophysica acta. Gene regulatory mechanisms, 2021-11, Vol.1864 (11-12), p.194752-194752, Article 194752

2021

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Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2259, p.297

Meyer, Jesse G

2021

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GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

BMC bioinformatics, 2020-04, Vol.21 (1), p.139-139, Article 139

2020

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Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

Briefings in bioinformatics, 2017-09, Vol.18 (5), p.886-901

2017

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Identification of dysregulated miRNAs in triple negative breast cancer: A meta‐analysis approach

Journal of cellular physiology, 2019-07, Vol.234 (7), p.11768-11779

2019

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Gene expression profiles and pathway enrichment analysis to identification of differentially expressed gene and signaling pathways in epithelial ovarian cancer based on high-throughput RNA-seq data

Genomics (San Diego, Calif.), 2022-01, Vol.114 (1), p.161-170

2022

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Primer on the Gene Ontology

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1446, p.25

2017

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Zinc oxide nanoparticle exposure triggers different gene expression patterns in maize shoots and roots

Environmental pollution (1987), 2017-10, Vol.229, p.479-488

2017

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Novel biomarkers identified by weighted gene co-expression network analysis for atherosclerosis

Herz, 2024-06, Vol.49 (3), p.198-209

2024

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The Unique Features of Proteins Depicting the Chicken Amniotic Fluid

Molecular & cellular proteomics, 2019-03, Vol.18 (Suppl 1), p.S174-S190

2019

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Comparative Transcriptomic Analyses for the Optimization of Thawing Regimes during Conventional Cryopreservation of Mature and Immature Human Testicular Tissue

International journal of molecular sciences, 2023-12, Vol.25 (1), p.214

2023

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Graph embeddings on gene ontology annotations for protein-protein interaction prediction

BMC bioinformatics, 2020-12, Vol.21 (Suppl 16), p.560-17, Article 560

2020

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Improving automatic GO annotation with semantic similarity

BMC bioinformatics, 2022-12, Vol.23 (Suppl 2), p.433-433, Article 433

2022

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Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

PLoS computational biology, 2021-10, Vol.17 (10), p.e1009463

2021

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Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality

BMC bioinformatics, 2019-06, Vol.20 (1), p.339-9, Article 339

2019

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Comparative Transcriptome and Expression Profiling of Resistant and Susceptible Banana Cultivars during Infection by Fusarium oxysporum

International journal of molecular sciences, 2021-03, Vol.22 (6), p.3002

2021

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Leveraging class hierarchy for detecting missing annotations on hierarchical multi-label classification

Computers in biology and medicine, 2023-01, Vol.152, p.106423-106423, Article 106423

2023

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Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity

International journal of molecular sciences, 2020-06, Vol.21 (12), p.4316

2020

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Novel symmetry-based gene-gene dissimilarity measures utilizing Gene Ontology: Application in gene clustering

Gene, 2018-12, Vol.679, p.341-351

2018

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HMGA1 promotes hepatocellular carcinoma proliferation, migration, and regulates cell cycle via miR-195-5p

Anti-cancer drugs, 2022-01, Vol.33 (1), p.e273

2022

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