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Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data

PLoS computational biology, 2015-08, Vol.11 (8), p.e1004403

2015

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Fluid intake and all-cause mortality, cardiovascular mortality and kidney function: a population-based longitudinal cohort study

Nephrology, dialysis, transplantation, 2014-07, Vol.29 (7), p.1377-1384

2014

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miR-10a is aberrantly overexpressed in Nucleophosmin1 mutated acute myeloid leukaemia and its suppression induces cell death

Molecular cancer, 2012-02, Vol.11 (1), p.8-8, Article 8

2012

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Identification of microRNA-mRNA modules using microarray data

BMC genomics, 2011-03, Vol.12 (1), p.138-138, Article 138

2011

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Measures of association for identifying microRNA-mRNA pairs of biological interest

PloS one, 2012-01, Vol.7 (1), p.e29612

2012

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Assessment of network module identification across complex diseases

Nature methods, 2019-09, Vol.16 (9), p.843-852

2019

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Mixture Models of Nucleotide Sequence Evolution that Account for Heterogeneity in the Substitution Process Across Sites and Across Lineages

Systematic biology, 2014-09, Vol.63 (5), p.726-742

2014

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Identifying Optimal Models of Evolution

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1525, p.379

2017

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MicroRNA-155 as an inducer of apoptosis and cell differentiation in Acute Myeloid Leukaemia

Molecular cancer, 2014-04, Vol.13 (1), p.79-79, Article 79

2014

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MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis

Pigment cell and melanoma research, 2015-05, Vol.28 (3), p.254-266

2015

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Phylogenetic model evaluation

Methods in molecular biology (Clifton, N.J.), 2008, Vol.452, p.331

2008

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Intraspecific Transcriptome Variation and Sex-Biased Expression in Anopheles arabiensis

Genome biology and evolution, 2021-09, Vol.13 (9)

2021

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Reducing Model Complexity of the General Markov Model of Evolution

Molecular biology and evolution, 2011-11, Vol.28 (11), p.3045-3059

2011

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Two Stationary Nonhomogeneous Markov Models of Nucleotide Sequence Evolution

Systematic biology, 2011-01, Vol.60 (1), p.74-86

2011

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Functional divergence of the miRNA transcriptome at the onset of Drosophila metamorphosis

Molecular biology and evolution, 2014-10, Vol.31 (10), p.2557-2572

2014

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Estimation of Phylogeny and Invariant Sites under the General Markov Model of Nucleotide Sequence Evolution

Systematic biology, 2007-04, Vol.56 (2), p.155-162

2007

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Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data

Nucleic acids research, 2009-05, Vol.37 (8), p.e60-e60

2009

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Molecular interaction networks for the analysis of human disease: Utility, limitations, and considerations

Proteomics (Weinheim), 2013-12, Vol.13 (23-24), p.3393-3405

2013

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Expression profiling of cytogenetically normal acute myeloid leukemia identifies MicroRNAs that target genes involved in monocytic differentiation

American journal of hematology, 2011-01, Vol.86 (1), p.2-11

2011

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Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics

Cell systems, 2020-08, Vol.11 (2), p.186-195.e9

2020

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Gene profiling reveals association between altered Wnt signaling and loss of T‐cell potential with age in human hematopoietic stem cells

Aging cell, 2014-08, Vol.13 (4), p.744-754

2014

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Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden

Pigment cell and melanoma research, 2013-09, Vol.26 (5), p.708-722

2013

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VAN: an R package for identifying biologically perturbed networks via differential variability analysis

BMC research notes, 2013-10, Vol.6 (1), p.430-430, Article 430

2013

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A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

JCO clinical cancer informatics, 2017-11, Vol.1 (1), p.1-15

2017

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SeqVis: a tool for detecting compositional heterogeneity among aligned nucleotide sequences

Methods in molecular biology (Clifton, N.J.), 2009, Vol.537, p.65

2009

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Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data

Fluid intake and all-cause mortality, cardiovascular mortality and kidney function: a population-based longitudinal cohort study

miR-10a is aberrantly overexpressed in Nucleophosmin1 mutated acute myeloid leukaemia and its suppression induces cell death

Identification of microRNA-mRNA modules using microarray data

Measures of association for identifying microRNA-mRNA pairs of biological interest

Assessment of network module identification across complex diseases

Mixture Models of Nucleotide Sequence Evolution that Account for Heterogeneity in the Substitution Process Across Sites and Across Lineages

Identifying Optimal Models of Evolution

MicroRNA-155 as an inducer of apoptosis and cell differentiation in Acute Myeloid Leukaemia

MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis

Phylogenetic model evaluation

Intraspecific Transcriptome Variation and Sex-Biased Expression in Anopheles arabiensis

Reducing Model Complexity of the General Markov Model of Evolution

Two Stationary Nonhomogeneous Markov Models of Nucleotide Sequence Evolution

Functional divergence of the miRNA transcriptome at the onset of Drosophila metamorphosis

Estimation of Phylogeny and Invariant Sites under the General Markov Model of Nucleotide Sequence Evolution

Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data

Molecular interaction networks for the analysis of human disease: Utility, limitations, and considerations

Expression profiling of cytogenetically normal acute myeloid leukemia identifies MicroRNAs that target genes involved in monocytic differentiation

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics

Gene profiling reveals association between altered Wnt signaling and loss of T‐cell potential with age in human hematopoietic stem cells

Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden

VAN: an R package for identifying biologically perturbed networks via differential variability analysis

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

SeqVis: a tool for detecting compositional heterogeneity among aligned nucleotide sequences

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