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Exploring the resistance mechanism of triple-negative breast cancer to paclitaxel through the scRNA-seq analysis

PloS one, 2024-01, Vol.19 (1), p.e0297260-e0297260

2024

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Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

Scientific reports, 2023-01, Vol.13 (1), p.1197-1197, Article 1197

2023

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A novel computational method enables RNA editome profiling during human hematopoiesis from scRNA-seq data

Scientific reports, 2023-06, Vol.13 (1), p.10335-10335, Article 10335

2023

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Effect of distance measures on confidences of t-SNE embeddings and its implications on clustering for scRNA-seq data

Scientific reports, 2023-04, Vol.13 (1), p.6567-6567, Article 6567

2023

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Identification of a hypoxia-related gene prognostic signature in colorectal cancer based on bulk and single-cell RNA-seq

Scientific reports, 2023-02, Vol.13 (1), p.2503-2503, Article 2503

2023

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Integration of single-cell RNA-seq and bulk RNA-seq to construct liver hepatocellular carcinoma stem cell signatures to explore their impact on patient prognosis and treatment

PloS one, 2024-04, Vol.19 (4), p.e0298004-e0298004

2024

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Human cancer long non-coding RNA transcriptomes

PloS one, 2011-10, Vol.6 (10), p.e25915-e25915

2011

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Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells

PloS one, 2023-02, Vol.18 (2), p.e0281898-e0281898

2023

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A novel tissue specific alternative splicing variant mitigates phenotypes in Ets2 frame-shift mutant models

Scientific reports, 2021-04, Vol.11 (1), p.8297-8297, Article 8297

2021

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Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells

Scientific reports, 2017-02, Vol.7 (1), p.43583-43583, Article 43583

2017

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Silver Nanoparticle Exposure Induces Neurotoxicity in the Rat Hippocampus Without Increasing the Blood-Brain Barrier Permeability

Journal of biomedical nanotechnology, 2018-07, Vol.14 (7), p.1330

2018

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Development of an experimental method of systematically estimating protein expression limits in HEK293 cells

Scientific reports, 2020-03, Vol.10 (1), p.4798, Article 4798

2020

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Imputation method for single-cell RNA-seq data using neural topic model

Gigascience, 2022-12, Vol.12

2022

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Repurposing of US-FDA-approved drugs as negative modulators of ubiquitin specific protease-7 (USP7)

Heliyon, 2024-03, Vol.10 (5), p.e26345-e26345, Article e26345

2024

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Transcriptome analysis reveals key genes and pathways for prickle development in Zanthoxylum armatum

Heliyon, 2024-03, Vol.10 (5), p.e27222, Article e27222

2024

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Molecular phenotypes distinguish patients with relatively stable from progressive idiopathic pulmonary fibrosis (IPF)

PloS one, 2009-04, Vol.4 (4), p.e5134

2009

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Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

Gigascience, 2022-12, Vol.12

2022

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Preparing sequencing grade RNAs from a small number of FACS-sorted larvae macrophages isolated from enzyme free dissociated zebrafish larvae

MethodsX, 2022-01, Vol.9, p.101651-101651, Article 101651

2022

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Involvement of a velvet protein FgVeA in the regulation of asexual development, lipid and secondary metabolisms and virulence in Fusarium graminearum

PloS one, 2011-11, Vol.6 (11), p.e28291

2011

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Identifying ultrasensitive HGF dose-response functions in a 3D mammalian system for synthetic morphogenesis

Scientific reports, 2016-12, Vol.6 (1), p.39178, Article 39178

2016

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A matter of origin - identification of SEMA3A, BGLAP, SPP1 and PHEX as distinctive molecular features between bone site-specific human osteoblasts on transcription level

Frontiers in bioengineering and biotechnology, 2022-09, Vol.10, p.918866-918866

2022

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Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones

PloS one, 2013-01, Vol.8 (1), p.e53562

2013

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Effect of Hyperglycemia on Gene Expression during Early Organogenesis in Mice

PloS one, 2016-07, Vol.11 (7), p.e0158035-e0158035

2016

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De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection

PloS one, 2016-02, Vol.11 (2), p.e0148453-e0148453

2016

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Exploring the resistance mechanism of triple-negative breast cancer to paclitaxel through the scRNA-seq analysis

Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

A novel computational method enables RNA editome profiling during human hematopoiesis from scRNA-seq data

Effect of distance measures on confidences of t-SNE embeddings and its implications on clustering for scRNA-seq data

Identification of a hypoxia-related gene prognostic signature in colorectal cancer based on bulk and single-cell RNA-seq

Integration of single-cell RNA-seq and bulk RNA-seq to construct liver hepatocellular carcinoma stem cell signatures to explore their impact on patient prognosis and treatment

Human cancer long non-coding RNA transcriptomes

Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells

A novel tissue specific alternative splicing variant mitigates phenotypes in Ets2 frame-shift mutant models

Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells

Silver Nanoparticle Exposure Induces Neurotoxicity in the Rat Hippocampus Without Increasing the Blood-Brain Barrier Permeability

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression

Development of an experimental method of systematically estimating protein expression limits in HEK293 cells

Imputation method for single-cell RNA-seq data using neural topic model

Repurposing of US-FDA-approved drugs as negative modulators of ubiquitin specific protease-7 (USP7)

Transcriptome analysis reveals key genes and pathways for prickle development in Zanthoxylum armatum

Molecular phenotypes distinguish patients with relatively stable from progressive idiopathic pulmonary fibrosis (IPF)

Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

Preparing sequencing grade RNAs from a small number of FACS-sorted larvae macrophages isolated from enzyme free dissociated zebrafish larvae

Involvement of a velvet protein FgVeA in the regulation of asexual development, lipid and secondary metabolisms and virulence in Fusarium graminearum

Identifying ultrasensitive HGF dose-response functions in a 3D mammalian system for synthetic morphogenesis

A matter of origin - identification of SEMA3A, BGLAP, SPP1 and PHEX as distinctive molecular features between bone site-specific human osteoblasts on transcription level

Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones

Effect of Hyperglycemia on Gene Expression during Early Organogenesis in Mice

De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection

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