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Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX

Trends in biotechnology (Regular ed.), 2017-10, Vol.35 (10), p.901-903

2017

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MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

BMC genomics, 2019-06, Vol.20 (Suppl 5), p.423-423, Article 423

2019

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Challenges and recommendations to improve the installability and archival stability of omics computational tools

PLoS biology, 2019-06, Vol.17 (6), p.e3000333

2019

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Fasting-Mimicking Diet Inhibits Autophagy and Synergizes with Chemotherapy to Promote T-Cell-Dependent Leukemia-Free Survival

Cancers, 2023-12, Vol.15 (24), p.5870

2023

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RNA-seq data science: From raw data to effective interpretation

Frontiers in genetics, 2023-03, Vol.14, p.997383-997383

2023

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Estimation of alternative splicing isoform frequencies from RNA-Seq data

Algorithms for molecular biology, 2011-04, Vol.6 (1), p.9-9, Article 9

2011

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The knowns and unknowns of long COVID-19: from mechanisms to therapeutical approaches

Frontiers in immunology, 2024-03, Vol.15, p.1344086-1344086

2024

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Improving the usability and comprehensiveness of microbial databases

BMC biology, 2020-04, Vol.18 (1), p.37-37, Article 37

2020

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Inferring viral quasispecies spectra from 454 pyrosequencing reads

BMC bioinformatics, 2011-07, Vol.12 Suppl 6 (S6), p.S1-S1, Article S1

2011

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pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research

Frontiers in immunology, 2022-10, Vol.13, p.954078-954078

2022

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Recommendations to enhance rigor and reproducibility in biomedical research

Gigascience, 2020-06, Vol.9 (6)

2020

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The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe

Gigascience, 2022-09, Vol.11

2022

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PUMAA: A Platform for Accessible Microbiome Analysis in the Undergraduate Classroom

Frontiers in microbiology, 2020-10, Vol.11, p.584699-584699

2020

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Correction to: Improving the usability and comprehensiveness of microbial databases

BMC biology, 2020-07, Vol.18 (1), p.1-92, Article 92

2020

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Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research

Gigascience, 2020-09, Vol.9 (9)

2020

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The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel

Diagnostics (Basel), 2023-09, Vol.13 (18), p.2993

2023

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TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

BMC bioinformatics, 2012-12, Vol.13 (S18), p.A11-A11, Article A11

2012

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Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer

Cell, 2020-06, Vol.181 (7), p.1612-1625.e13

2020

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Climate warming, environmental degradation and pollution as drivers of antibiotic resistance

Environmental pollution (1987), 2024-04, Vol.346, p.123649-123649, Article 123649

2024

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The DNA methylation landscape across the TCR loci in patients with acute myeloid leukemia

International immunopharmacology, 2024-09, Vol.138, p.112376, Article 112376

2024

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TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

Gigascience, 2022-12, Vol.12

2022

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Accurate viral population assembly from ultra-deep sequencing data

Bioinformatics (Oxford, England), 2014-06, Vol.30 (12), p.i329-i337

2014

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Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella -Infected and Uninfected Mice

Journal of computational biology, 2024-06

2024

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The evolution of computational research in a data-centric world

Cell, 2024-08, Vol.187 (17), p.4449-4457

2024

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The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data

Gigascience, 2021-02, Vol.10 (2)

2021

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Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

Challenges and recommendations to improve the installability and archival stability of omics computational tools

Fasting-Mimicking Diet Inhibits Autophagy and Synergizes with Chemotherapy to Promote T-Cell-Dependent Leukemia-Free Survival

RNA-seq data science: From raw data to effective interpretation

Estimation of alternative splicing isoform frequencies from RNA-Seq data

The knowns and unknowns of long COVID-19: from mechanisms to therapeutical approaches

Improving the usability and comprehensiveness of microbial databases

Inferring viral quasispecies spectra from 454 pyrosequencing reads

pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research

Recommendations to enhance rigor and reproducibility in biomedical research

The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe

PUMAA: A Platform for Accessible Microbiome Analysis in the Undergraduate Classroom

Correction to: Improving the usability and comprehensiveness of microbial databases

Corrigendum to: Recommendations to enhance rigor and reproducibility in biomedical research

The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer

Climate warming, environmental degradation and pollution as drivers of antibiotic resistance

The DNA methylation landscape across the TCR loci in patients with acute myeloid leukemia

TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

Accurate viral population assembly from ultra-deep sequencing data

Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella -Infected and Uninfected Mice

The evolution of computational research in a data-centric world

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data

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