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Enzyme structure correlates with variant effect predictability

Computational and structural biotechnology journal, 2024-12, Vol.23, p.3489-3497

2024

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A catalogue of recombination coldspots in interspecific tomato hybrids

PLoS genetics, 2024-07, Vol.20 (7), p.e1011336

2024

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Development and Validation of Gene-Based SSR Markers in the Genus Mesembryanthemum

Scientifica (Cairo), 2023-10, Vol.2023, p.1-11

2023

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WEE1 inhibitor adavosertib in combination with carboplatin in advanced TP53 mutated ovarian cancer: A biomarker-enriched phase II study

Gynecologic oncology, 2023-07, Vol.174, p.239-246

2023

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Beyond sequence: Structure-based machine learning

Computational and structural biotechnology journal, 2023-01, Vol.21, p.630-643

2023

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Prioritizing candidate eQTL causal genes in Arabidopsis using RANDOM FORESTS

G3 : genes - genomes - genetics, 2022-11, Vol.12 (11)

2022

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PanTools v3: functional annotation, classification and phylogenomics

Bioinformatics, 2022-09, Vol.38 (18), p.4403-4405

2022

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Adavosertib in combination with carboplatin in advanced TP53- mutated platinum-resistant ovarian cancer

Journal of clinical oncology, 2022-06, Vol.40 (16_suppl), p.5516-5516

2022

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Secondary Metabolism Gene Diversity and Cocultivation toward Isolation and Identification of Potent Bioactive Compounds Producing Bacterial Strains from Thailand’s Natural Resources

Scientifica (Cairo), 2022, Vol.2022, p.2827831-11

2022

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Uncovering the Role of Metabolism in Oomycete-Host Interactions Using Genome-Scale Metabolic Models

Frontiers in microbiology, 2021-10, Vol.12, p.748178

2021

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Signal-based optical map alignment

PloS one, 2021-09, Vol.16 (9), p.e0253102-e0253102

2021

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FRETboard: Semisupervised classification of FRET traces

Biophysical journal, 2021-08, Vol.120 (16), p.3253-3260

2021

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Accelerated discovery of functional genomic variation in pigs

Genomics (San Diego, Calif.), 2021-07, Vol.113 (4), p.2229-2239

2021

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The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

BMC genomics, 2021-04, Vol.22 (1), p.265-265, Article 265

2021

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Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008197-e1008197

2021

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Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana

Frontiers in genetics, 2021-01, Vol.11, p.609117

2021

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BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Gigascience, 2021-01, Vol.10 (1)

2021

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Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

G3 : genes - genomes - genetics, 2021-01, Vol.11 (1)

2021

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Geometricus represents protein structures as shape-mers derived from moment invariants

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i718-i725

2020

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The santalene synthase from Cinnamomum camphora: Reconstruction of a sesquiterpene synthase from a monoterpene synthase

Archives of biochemistry and biophysics, 2020-11, Vol.695, p.108647-108647, Article 108647

2020

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Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana

G3 : genes - genomes - genetics, 2020-11, Vol.10 (11), p.4215-4226

2020

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Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

PLoS genetics, 2020-09, Vol.16 (9), p.e1009027-e1009027

2020

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Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design

Trials, 2020-07, Vol.21 (1), p.644-644, Article 644

2020

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Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

BMC bioinformatics, 2020-06, Vol.21 (1), p.253-253, Article 253

2020

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Enzyme structure correlates with variant effect predictability

Expanding the Triangle of U: Comparative analysis of the Hirschfeldia incana genome provides insights into chromosomal evolution, phylogenomics and high photosynthesis-related traits

A catalogue of recombination coldspots in interspecific tomato hybrids

Development and Validation of Gene-Based SSR Markers in the Genus Mesembryanthemum

WEE1 inhibitor adavosertib in combination with carboplatin in advanced TP53 mutated ovarian cancer: A biomarker-enriched phase II study

Beyond sequence: Structure-based machine learning

Prioritizing candidate eQTL causal genes in Arabidopsis using RANDOM FORESTS

PanTools v3: functional annotation, classification and phylogenomics

Adavosertib in combination with carboplatin in advanced TP53- mutated platinum-resistant ovarian cancer

Secondary Metabolism Gene Diversity and Cocultivation toward Isolation and Identification of Potent Bioactive Compounds Producing Bacterial Strains from Thailand’s Natural Resources

Uncovering the Role of Metabolism in Oomycete-Host Interactions Using Genome-Scale Metabolic Models

Signal-based optical map alignment

FRETboard: Semisupervised classification of FRET traces

Accelerated discovery of functional genomic variation in pigs

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

Geometricus represents protein structures as shape-mers derived from moment invariants

The santalene synthase from Cinnamomum camphora: Reconstruction of a sesquiterpene synthase from a monoterpene synthase

Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

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