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Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer

Scientific reports, 2020-08, Vol.10 (1), p.14071-14071, Article 14071

2020

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Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells

PloS one, 2015-11, Vol.10 (11), p.e0143627-e0143627

2015

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The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders

International journal of molecular sciences, 2022-05, Vol.23 (11), p.6118

2022

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Targeting tumor-stroma communication by blocking endothelin-1 receptors sensitizes high-grade serous ovarian cancer to PARP inhibition

Cell death & disease, 2023-01, Vol.14 (1), p.5-14, Article 5

2023

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NR2F1 shapes mitochondria in the mouse brain, providing new insights into Bosch-Boonstra-Schaaf optic atrophy syndrome

Disease models & mechanisms, 2023-06, Vol.16 (6)

2023

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ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly and p53

Cell death & disease, 2016-10, Vol.7 (10), p.e2440-e2440

2016

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Comprehensive genomic profiling on metastatic Melanoma: results from a network screening from 7 Italian Cancer Centres

Journal of translational medicine, 2024-01, Vol.22 (1), p.29-7, Article 29

2024

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SP1 and STAT3 Functionally Synergize to Induce the RhoU Small GTPase and a Subclass of Non-canonical WNT Responsive Genes Correlating with Poor Prognosis in Breast Cancer

Cancers, 2019-01, Vol.11 (1), p.101

2019

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3plex enables deep computational investigation of triplex forming lncRNAs

Computational and structural biotechnology journal, 2023-01, Vol.21, p.3091-3102

2023

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Dihydroorotate dehydrogenase inhibition reveals metabolic vulnerability in chronic myeloid leukemia

Cell death & disease, 2022-06, Vol.13 (6), p.576-13, Article 576

2022

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Circulating miR-1246 and miR-485-3p as Promising Biomarkers of Clinical Response and Outcome in Melanoma Patients Treated with Targeted Therapy

Cancers, 2022-07, Vol.14 (15), p.3706

2022

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An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction

European journal of human genetics : EJHG, 2011-11, Vol.19 (11), p.1173-1180

2011

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In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression

BMC bioinformatics, 2017-03, Vol.18 (Suppl 5), p.144-144, Article 144

2017

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Evaluation of candidate genes from orphan FEB and GEFS+ loci by analysis of human brain gene expression atlases

PloS one, 2011-08, Vol.6 (8), p.e23149-e23149

2011

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Visual search of neuropil-enriched RNAs from brain in situ hybridization data through the image analysis pipeline hippo-ATESC

PloS one, 2013-09, Vol.8 (9), p.e74481-e74481

2013

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B lymphocytes directly contribute to tissue fibrosis in patients with IgG4-related disease

Journal of allergy and clinical immunology, 2020-03, Vol.145 (3), p.968-981.e14

2020

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Evolutionary Rewiring of Human Regulatory Networks by Waves of Genome Expansion

American journal of human genetics, 2018-02, Vol.102 (2), p.207-218

2018

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The Roles of Multiparametric Magnetic Resonance Imaging, PCA3 and Prostate Health Index—Which is the Best Predictor of Prostate Cancer after a Negative Biopsy?

The Journal of urology, 2014-07, Vol.192 (1), p.60-66

2014

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Genome-wide Identification and Characterization of Fixed Human-Specific Regulatory Regions

American journal of human genetics, 2014-07, Vol.95 (1), p.39-48

2014

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A functional strategy to characterize expression Quantitative Trait Loci

Human genetics, 2017-11, Vol.136 (11-12), p.1477-1487

2017

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B lymphocytes directly contribute to tissue fibrosis in IgG4-Related Disease

Journal of allergy and clinical immunology, 2019-07, Vol.145 (3), p.968-981.e14

2019

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KungFQ: A Simple and Powerful Approach to Compress fastq Files

IEEE/ACM transactions on computational biology and bioinformatics, 2012-11, Vol.9 (6), p.1837-1842

2012

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Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities

Bioinformatics, 2013-02, Vol.29 (4), p.468-475

2013

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Candidate gene prioritization based on spatially mapped gene expression: an application to XLMR

Bioinformatics, 2010-09, Vol.26 (18), p.i618-i624

2010

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Correction to: ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly

Cell death & disease, 2018-11, Vol.9 (12), p.1155-1, Article 1155

2018

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Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer

Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells

The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders

Targeting tumor-stroma communication by blocking endothelin-1 receptors sensitizes high-grade serous ovarian cancer to PARP inhibition

NR2F1 shapes mitochondria in the mouse brain, providing new insights into Bosch-Boonstra-Schaaf optic atrophy syndrome

ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly and p53

Comprehensive genomic profiling on metastatic Melanoma: results from a network screening from 7 Italian Cancer Centres

SP1 and STAT3 Functionally Synergize to Induce the RhoU Small GTPase and a Subclass of Non-canonical WNT Responsive Genes Correlating with Poor Prognosis in Breast Cancer

3plex enables deep computational investigation of triplex forming lncRNAs

Dihydroorotate dehydrogenase inhibition reveals metabolic vulnerability in chronic myeloid leukemia

Circulating miR-1246 and miR-485-3p as Promising Biomarkers of Clinical Response and Outcome in Melanoma Patients Treated with Targeted Therapy

An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction

In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression

Evaluation of candidate genes from orphan FEB and GEFS+ loci by analysis of human brain gene expression atlases

Visual search of neuropil-enriched RNAs from brain in situ hybridization data through the image analysis pipeline hippo-ATESC

B lymphocytes directly contribute to tissue fibrosis in patients with IgG4-related disease

Evolutionary Rewiring of Human Regulatory Networks by Waves of Genome Expansion

The Roles of Multiparametric Magnetic Resonance Imaging, PCA3 and Prostate Health Index—Which is the Best Predictor of Prostate Cancer after a Negative Biopsy?

Genome-wide Identification and Characterization of Fixed Human-Specific Regulatory Regions

A functional strategy to characterize expression Quantitative Trait Loci

B lymphocytes directly contribute to tissue fibrosis in IgG4-Related Disease

KungFQ: A Simple and Powerful Approach to Compress fastq Files

Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities

Candidate gene prioritization based on spatially mapped gene expression: an application to XLMR

Correction to: ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly

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