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A machine-learning based model for automated recommendation of individualized treatment of rifampicin-resistant tuberculosis

PloS one, 2024-09, Vol.19 (9), p.e0306101

2024

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Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires

Frontiers in immunology, 2019-11, Vol.10, p.2820-2820

2019

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Predicting compound-protein interaction using hierarchical graph convolutional networks

PloS one, 2022-07, Vol.17 (7), p.e0258628-e0258628

2022

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A new Plasmodium vivax reference genome for South American isolates

BMC genomics, 2023-10, Vol.24 (1), p.606-14, Article 606

2023

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Osmotic stress inhibits leaf growth of Arabidopsis thaliana by enhancing ARF‐mediated auxin responses

The New phytologist, 2020-06, Vol.226 (6), p.1766-1780

2020

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Auranofin reveals therapeutic anticancer potential by triggering distinct molecular cell death mechanisms and innate immunity in mutant p53 non-small cell lung cancer

Redox biology, 2021-06, Vol.42, p.101949-101949, Article 101949

2021

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Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay

PloS one, 2018-12, Vol.13 (12), p.e0208207-e0208207

2018

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MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

PloS one, 2020-01, Vol.15 (1), p.e0226770-e0226770

2020

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speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification

PLoS computational biology, 2018-03, Vol.14 (3), p.e1006018-e1006018

2018

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Ferroptosis Induction in Multiple Myeloma Cells Triggers DNA Methylation and Histone Modification Changes Associated with Cellular Senescence

International journal of molecular sciences, 2021-11, Vol.22 (22), p.12234

2021

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Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders

Vaccine, 2018-10, Vol.36 (42), p.6282-6289

2018

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Getting your peaks in line: a review of alignment methods for NMR spectral data

Metabolites, 2013-04, Vol.3 (2), p.259-276

2013

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An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data

BMC bioinformatics, 2011-10, Vol.12 (1), p.405-405, Article 405

2011

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Oocyte maturation under lipotoxic conditions induces carryover transcriptomic and functional alterations during post-hatching development of good-quality blastocysts: novel insights from a bovine embryo-transfer model

Human reproduction (Oxford), 2020-02, Vol.35 (2), p.293-307

2020

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Ectopic microRNA-150-5p transcription sensitizes glucocorticoid therapy response in MM1S multiple myeloma cells but fails to overcome hormone therapy resistance in MM1R cells

PloS one, 2014-12, Vol.9 (12), p.e113842-e113842

2014

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Grasping frequent subgraph mining for bioinformatics applications

BioData mining, 2018-09, Vol.11 (1), p.20-20, Article 20

2018

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Fractionated irradiation of MCF7 breast cancer cells rewires a gene regulatory circuit towards a treatment‐resistant stemness phenotype

Molecular oncology, 2022-10, Vol.16 (19), p.3410-3435

2022

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Lack of functional TCR-epitope interaction is associated with herpes zoster through reduced downstream T cell activation

Cell reports (Cambridge), 2024-04, Vol.43 (4), p.114062-114062, Article 114062

2024

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Activation of Interferon-Stimulated Genes following Varicella-Zoster Virus Infection in a Human iPSC-Derived Neuronal In Vitro Model Depends on Exogenous Interferon-α

Viruses, 2022-11, Vol.14 (11), p.2517

2022

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Prediction of kinase-specific phosphorylation sites using conditional random fields

Bioinformatics, 2008-12, Vol.24 (24), p.2857-2864

2008

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A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis

BMC medical informatics and decision making, 2022-03, Vol.22 (1), p.56-56, Article 56

2022

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Band 3-mediated Plasmodium vivax invasion is associated with transcriptional variation in PvTRAg genes

Frontiers in cellular and infection microbiology, 2022-09, Vol.12, p.1011692

2022

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Structural properties of prokaryotic promoter regions correlate with functional features

PloS one, 2014-02, Vol.9 (2), p.e88717-e88717

2014

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Viral Evolution and Immunology of SARS-CoV-2 in a Persistent Infection after Treatment with Rituximab

Viruses, 2022-04, Vol.14 (4), p.752

2022

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Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids

Scientific reports, 2017-06, Vol.7 (1), p.3725-11, Article 3725

2017

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A machine-learning based model for automated recommendation of individualized treatment of rifampicin-resistant tuberculosis

Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires

Predicting compound-protein interaction using hierarchical graph convolutional networks

A new Plasmodium vivax reference genome for South American isolates

Osmotic stress inhibits leaf growth of Arabidopsis thaliana by enhancing ARF‐mediated auxin responses

Auranofin reveals therapeutic anticancer potential by triggering distinct molecular cell death mechanisms and innate immunity in mutant p53 non-small cell lung cancer

Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification

Ferroptosis Induction in Multiple Myeloma Cells Triggers DNA Methylation and Histone Modification Changes Associated with Cellular Senescence

Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders

Getting your peaks in line: a review of alignment methods for NMR spectral data

An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data

Oocyte maturation under lipotoxic conditions induces carryover transcriptomic and functional alterations during post-hatching development of good-quality blastocysts: novel insights from a bovine embryo-transfer model

Ectopic microRNA-150-5p transcription sensitizes glucocorticoid therapy response in MM1S multiple myeloma cells but fails to overcome hormone therapy resistance in MM1R cells

Grasping frequent subgraph mining for bioinformatics applications

Fractionated irradiation of MCF7 breast cancer cells rewires a gene regulatory circuit towards a treatment‐resistant stemness phenotype

Lack of functional TCR-epitope interaction is associated with herpes zoster through reduced downstream T cell activation

Activation of Interferon-Stimulated Genes following Varicella-Zoster Virus Infection in a Human iPSC-Derived Neuronal In Vitro Model Depends on Exogenous Interferon-α

Prediction of kinase-specific phosphorylation sites using conditional random fields

A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis

Band 3-mediated Plasmodium vivax invasion is associated with transcriptional variation in PvTRAg genes

Structural properties of prokaryotic promoter regions correlate with functional features

Viral Evolution and Immunology of SARS-CoV-2 in a Persistent Infection after Treatment with Rituximab

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids

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