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Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Protein science, 2018-01, Vol.27 (1), p.159-171

Heymann, J. Bernard

2018

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Single particle reconstruction and validation using Bsoft for the map challenge

Journal of structural biology, 2018-10, Vol.204 (1), p.90-95

Heymann, J. Bernard

2018

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Structural Studies of Bacteriophage Φ6 and Its Transformations during Its Life Cycle

Viruses, 2023-12, Vol.15 (12), p.2404

Heymann, J Bernard

2023

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Bsoft: Image processing and molecular modeling for electron microscopy

Journal of structural biology, 2007, Vol.157 (1), p.3-18

2007

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Subunit Folds and Maturation Pathway of a dsRNA Virus Capsid

Structure (London), 2013-08, Vol.21 (8), p.1374-1383

2013

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The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly

Structure (London), 2016-07, Vol.24 (7), p.1068-1080

2016

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One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

Journal of structural biology, 2013-11, Vol.184 (2), p.226-236

2013

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The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage

Computer methods and programs in biomedicine, 2022-06, Vol.220, p.106799-106799, Article 106799

Heymann, J Bernard

2022

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The Mottled Capsid of the Salmonella Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell

Viruses, 2020-08, Vol.12 (9), p.910

2020

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Validation of 3D EM Reconstructions: The Phantom in the Noise

AIMS biophysics, 2015-01, Vol.2 (1), p.21-35

Heymann, J Bernard

2015

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Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography

Journal of structural biology, 2012-02, Vol.177 (2), p.179-192

2012

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Computational resources for cryo-electron tomography in Bsoft

Journal of structural biology, 2008-03, Vol.161 (3), p.232-242

2008

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Map Challenge assessment: Fair comparison of single particle cryoEM reconstructions

Journal of structural biology, 2018-11, Vol.204 (2), p.360-367

Heymann, J. Bernard

2018

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CTF Challenge: Result summary

Journal of structural biology, 2015-06, Vol.190 (3), p.348-359

2015

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Advances in understanding the molecular structure of retinoschisin while questions remain of biological function

Progress in retinal and eye research, 2023-07, Vol.95, p.101147-101147, Article 101147

2023

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Three-dimensional cellular ultrastructure resolved by X-ray microscopy

Nature methods, 2010-12, Vol.7 (12), p.985-987

2010

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A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress

The EMBO journal, 2014-09, Vol.33 (17), p.1896-1911

2014

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A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography

Journal of structural biology, 2006-03, Vol.153 (3), p.231-240

2006

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Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology

Journal of structural biology, 2005-08, Vol.151 (2), p.196-207

2005

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The first single particle analysis Map Challenge: A summary of the assessments

Journal of structural biology, 2018-11, Vol.204 (2), p.291-300

2018

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Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity

Current opinion in structural biology, 2005-04, Vol.15 (2), p.227-236

2005

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The Electron Microscopy eXchange (EMX) initiative

Journal of structural biology, 2016-05, Vol.194 (2), p.156-163

2016

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Clathrin-coated vesicles from brain have small payloads: A cryo-electron tomographic study

Journal of structural biology, 2013-10, Vol.184 (1), p.43-51

2013

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RSV Capsid Polymorphism Correlates with Polymerization Efficiency and Envelope Glycoprotein Content: Implications that Nucleation Controls Morphogenesis

Journal of molecular biology, 2008-02, Vol.376 (4), p.1168-1181

2008

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Initial Stages of V(D)J Recombination: The Organization of RAG1/2 and RSS DNA in the Postcleavage Complex

Molecular cell, 2009-07, Vol.35 (2), p.217-227

2009

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Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Single particle reconstruction and validation using Bsoft for the map challenge

Structural Studies of Bacteriophage Φ6 and Its Transformations during Its Life Cycle

Bsoft: Image processing and molecular modeling for electron microscopy

Subunit Folds and Maturation Pathway of a dsRNA Virus Capsid

The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly

One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage

The Mottled Capsid of the Salmonella Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell

Validation of 3D EM Reconstructions: The Phantom in the Noise

Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography

Computational resources for cryo-electron tomography in Bsoft

Map Challenge assessment: Fair comparison of single particle cryoEM reconstructions

CTF Challenge: Result summary

Advances in understanding the molecular structure of retinoschisin while questions remain of biological function

Three-dimensional cellular ultrastructure resolved by X-ray microscopy

A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress

A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography

Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology

The first single particle analysis Map Challenge: A summary of the assessments

Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity

The Electron Microscopy eXchange (EMX) initiative

Clathrin-coated vesicles from brain have small payloads: A cryo-electron tomographic study

RSV Capsid Polymorphism Correlates with Polymerization Efficiency and Envelope Glycoprotein Content: Implications that Nucleation Controls Morphogenesis

Initial Stages of V(D)J Recombination: The Organization of RAG1/2 and RSS DNA in the Postcleavage Complex

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