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SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm

Briefings in bioinformatics, 2021-11, Vol.22 (6)

2021

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MTGIpick allows robust identification of genomic islands from a single genome

Briefings in bioinformatics, 2018-05, Vol.19 (3), p.361-373

2018

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An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays

Briefings in bioinformatics, 2019-11, Vol.20 (6), p.2224-2235

2019

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Statewide Policy to Increase Provision of Take-Home Naloxone at Emergency Department Visits for Opioid Overdose, Rhode Island, 2018‒2019

American journal of public health (1971), 2023-04, Vol.113 (4), p.372-377

2023

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Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns

Briefings in bioinformatics, 2017-09, Vol.18 (5), p.761-773

2017

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Comparative analysis of inbreeding parameters and runs of homozygosity islands in 2 Italian autochthonous cattle breeds mainly raised in the Parmigiano-Reggiano cheese production region

Journal of dairy science, 2022-03, Vol.105 (3), p.2408-2425

2022

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Deciphering the genetic code of DNA methylation

Briefings in bioinformatics, 2021-09, Vol.22 (5)

2021

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A comprehensive overview of Infinium HumanMethylation450 data processing

Briefings in bioinformatics, 2014-11, Vol.15 (6), p.929-941

2014

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Elevated incidence of somatic mutations at prevalent genetic sites

Briefings in bioinformatics, 2024-03, Vol.25 (2)

2024

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Comparative epigenome analysis using Infinium DNA methylation BeadChips

Briefings in bioinformatics, 2023-01, Vol.24 (1)

2023

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E-value: a superior alternative to P-value and its adjustments in DNA methylation studies

Briefings in bioinformatics, 2023-07, Vol.24 (4)

2023

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Epigenome signature as an immunophenotype indicator prompts durable clinical immunotherapy benefits in lung adenocarcinoma

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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miProBERT: identification of microRNA promoters based on the pre-trained model BERT

Briefings in bioinformatics, 2023-05, Vol.24 (3)

2023

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Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis

Briefings in bioinformatics, 2022-03, Vol.23 (2)

2022

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Asian American and Native Hawaiian and Pacific Islander Visibility and Data Equity: Insights From NIH RADx-UP

American journal of public health (1971), 2024-05, Vol.114 (S5), p.S354-S359

2024

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Genome-wide analysis reveals that exon methylation facilitates its selective usage in the human transcriptome

Briefings in bioinformatics, 2018-09, Vol.19 (5), p.754-764

2018

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Comethyl: a network-based methylome approach to investigate the multivariate nature of health and disease

Briefings in bioinformatics, 2022-03, Vol.23 (2)

2022

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A survey of the approaches for identifying differential methylation using bisulfite sequencing data

Briefings in bioinformatics, 2018-09, Vol.19 (5), p.737-753

2018

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The substitution spectra of coronavirus genomes

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria

Briefings in bioinformatics, 2018-07, Vol.19 (4), p.566-574

2018

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Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties

Briefings in bioinformatics, 2017-05, Vol.18 (3), p.357-366

2017

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A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing

Briefings in bioinformatics, 2021-11, Vol.22 (6)

2021

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Metrics for evaluating differentially methylated region sets predicted from BS-seq data

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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Testing cell-type-specific mediation effects in genome-wide epigenetic studies

Briefings in bioinformatics, 2021-05, Vol.22 (3)

2021

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Methodological aspects of whole-genome bisulfite sequencing analysis

Briefings in bioinformatics, 2015-05, Vol.16 (3), p.369-379

2015

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SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm

MTGIpick allows robust identification of genomic islands from a single genome

An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays

Statewide Policy to Increase Provision of Take-Home Naloxone at Emergency Department Visits for Opioid Overdose, Rhode Island, 2018‒2019

Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns

Comparative analysis of inbreeding parameters and runs of homozygosity islands in 2 Italian autochthonous cattle breeds mainly raised in the Parmigiano-Reggiano cheese production region

Deciphering the genetic code of DNA methylation

A comprehensive overview of Infinium HumanMethylation450 data processing

Elevated incidence of somatic mutations at prevalent genetic sites

Comparative epigenome analysis using Infinium DNA methylation BeadChips

E-value: a superior alternative to P-value and its adjustments in DNA methylation studies

Epigenome signature as an immunophenotype indicator prompts durable clinical immunotherapy benefits in lung adenocarcinoma

miProBERT: identification of microRNA promoters based on the pre-trained model BERT

Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis

Asian American and Native Hawaiian and Pacific Islander Visibility and Data Equity: Insights From NIH RADx-UP

Genome-wide analysis reveals that exon methylation facilitates its selective usage in the human transcriptome

Comethyl: a network-based methylome approach to investigate the multivariate nature of health and disease

A survey of the approaches for identifying differential methylation using bisulfite sequencing data

The substitution spectra of coronavirus genomes

VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties

A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing

Metrics for evaluating differentially methylated region sets predicted from BS-seq data

Testing cell-type-specific mediation effects in genome-wide epigenetic studies

Methodological aspects of whole-genome bisulfite sequencing analysis

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