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InterPro in 2022

Nucleic acids research, 2023-01, Vol.51 (D1), p.D418-D427

2023

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The InterPro protein families and domains database: 20 years on

Nucleic acids research, 2021-01, Vol.49 (D1), p.D344-D354

2021

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CATH: expanding the horizons of structure-based functional annotations for genome sequences

Nucleic acids research, 2019-01, Vol.47 (D1), p.D280-D284

2019

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Generating functional protein variants with variational autoencoders

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008736-e1008736

2021

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Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

PLoS computational biology, 2012-03, Vol.8 (3), p.e1002403-e1002403

2012

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Alpha Helices Are More Robust to Mutations than Beta Strands

PLoS computational biology, 2016-12, Vol.12 (12), p.e1005242-e1005242

2016

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Inferring function using patterns of native disorder in proteins

PLoS computational biology, 2007-08, Vol.3 (8), p.e162-e162

2007

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Domain-Based and Family-Specific Sequence Identity Thresholds Increase the Levels of Reliable Protein Function Transfer

Journal of molecular biology, 2009-03, Vol.387 (2), p.416-430

2009

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Biases in the experimental annotations of protein function and their effect on our understanding of protein function space

PLoS computational biology, 2013-05, Vol.9 (5), p.e1003063-e1003063

2013

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The complexity of protein interactions unravelled from structural disorder

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008546-e1008546

2021

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Quantitative profiling of protease specificity

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008101-e1008101

2021

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Structural Diversity of Domain Superfamilies in the CATH Database

Journal of molecular biology, 2006-07, Vol.360 (3), p.725-741

2006

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Exploring the composition of protein-ligand binding sites on a large scale

PLoS computational biology, 2013-11, Vol.9 (11), p.e1003321

2013

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CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures

PLoS computational biology, 2007-11, Vol.3 (11), p.e232-e232

2007

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Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

PLoS computational biology, 2015-12, Vol.11 (12), p.e1004659-e1004659

2015

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An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005284-e1005284

2017

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Diversity in protein domain superfamilies

Current opinion in genetics & development, 2015-12, Vol.35, p.40-49

2015

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One Fold with Many Functions: The Evolutionary Relationships between TIM Barrel Families Based on their Sequences, Structures and Functions

Journal of Molecular Biology, 2002-08, Vol.321 (5), p.741-765

2002

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Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data

PLoS computational biology, 2013-06, Vol.9 (6), p.e1003077-e1003077

2013

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Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function

PLoS computational biology, 2010-03, Vol.6 (3), p.e1000700-e1000700

2010

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Plasticity of enzyme active sites

Trends in Biochemical Sciences, 2002-08, Vol.27 (8), p.419-426

2002

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1,000 structures and more from the MCSG

BMC structural biology, 2011-01, Vol.11 (1), p.2-2

2011

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Exploring structural diversity across the protein universe with The Encyclopedia of Domains

Science (American Association for the Advancement of Science), 2024-11, Vol.386 (6721), p.eadq4946

2024

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Fast structure alignment for protein databank searching

Proteins, structure, function, and bioinformatics, 1992-10, Vol.14 (2), p.139-167

1992

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Multiple protein structure alignment

Protein science, 1994-10, Vol.3 (10), p.1858-1870

1994

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InterPro in 2022

The InterPro protein families and domains database: 20 years on

CATH: expanding the horizons of structure-based functional annotations for genome sequences

Generating functional protein variants with variational autoencoders

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

Alpha Helices Are More Robust to Mutations than Beta Strands

Inferring function using patterns of native disorder in proteins

Domain-Based and Family-Specific Sequence Identity Thresholds Increase the Levels of Reliable Protein Function Transfer

Biases in the experimental annotations of protein function and their effect on our understanding of protein function space

The complexity of protein interactions unravelled from structural disorder

Quantitative profiling of protease specificity

Structural Diversity of Domain Superfamilies in the CATH Database

Exploring the composition of protein-ligand binding sites on a large scale

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins

Diversity in protein domain superfamilies

One Fold with Many Functions: The Evolutionary Relationships between TIM Barrel Families Based on their Sequences, Structures and Functions

Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data

Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function

Plasticity of enzyme active sites

1,000 structures and more from the MCSG

Exploring structural diversity across the protein universe with The Encyclopedia of Domains

Fast structure alignment for protein databank searching

Multiple protein structure alignment

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