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Multi-landmark alignment of genomic signals reveals conserved expression patterns across transcription start sites

Scientific reports, 2023-07, Vol.13 (1), p.10835-10835, Article 10835

2023

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Synthetic cooperation in engineered yeast populations

Proceedings of the National Academy of Sciences - PNAS, 2007-02, Vol.104 (6), p.1877-1882

2007

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Signal processing in the TGF-beta superfamily ligand-receptor network

PLoS computational biology, 2006-01, Vol.2 (1), p.e3-e3

2006

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Reliably quantifying the evolving worldwide dynamic state of the COVID-19 outbreak from death records, clinical parametrization, and demographic data

Scientific reports, 2021-10, Vol.11 (1), p.19952-19952, Article 19952

2021

Volltextzugriff (PDF)

CplexA: a Mathematica package to study macromolecular-assembly control of gene expression

Bioinformatics, 2010-08, Vol.26 (16), p.2060-2061

2010

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Entropy of Leukemia on Multidimensional Morphological and Molecular Landscapes

Physical review. X, 2014-05, Vol.4 (2), p.021038, Article 021038

Vilar, Jose M. G.

2014

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All-or-none amyloid disassembly via chaperone-triggered fibril unzipping favors clearance of α-synuclein toxic species

Proceedings of the National Academy of Sciences - PNAS, 2021-09, Vol.118 (36)

2021

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Ascertaining the initiation of epidemic resurgences: an application to the COVID-19 second surges in Europe and the Northeast United States

Royal Society open science, 2021-10, Vol.8 (10), p.210773-210773

2021

Volltextzugriff (PDF)

From molecular noise to behavioural variability in a single bacterium

Nature, 2004-04, Vol.428 (6982), p.574-578

2004

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Clearly Detectable, Kinetically Restricted Solid–Solid Phase Transition in cis-Ceramide Monolayers

Langmuir, 2018-10, Vol.34 (39), p.11749-11758

2018

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Failure of the work-Hamiltonian connection for free-energy calculations

Physical review letters, 2008-01, Vol.100 (2), p.020601-020601, Article 020601

2008

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Inferring the in vivo Looping Properties of DNA

Proceedings of the National Academy of Sciences - PNAS, 2005-12, Vol.102 (49), p.17642-17645

2005

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Reliable Prediction of Complex Phenotypes from a Modular Design in Free Energy Space: An Extensive Exploration of the lac Operon

ACS synthetic biology, 2013-10, Vol.2 (10), p.576-586

2013

Volltextzugriff (PDF)

Robustness of DNA looping across multiple cell divisions in individual bacteria

Proceedings of the National Academy of Sciences - PNAS, 2022-08, Vol.119 (33), p.e2200061119-e2200061119

2022

Volltextzugriff (PDF)

DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise

Current opinion in genetics & development, 2005-04, Vol.15 (2), p.136-144

2005

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DNA looping: the consequences and its control

Current opinion in structural biology, 2006-06, Vol.16 (3), p.344-350

2006

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Control of gene expression by modulated self-assembly

Nucleic acids research, 2011-09, Vol.39 (16), p.6854

2011

Volltextzugriff (PDF)

Trafficking Coordinate Description of Intracellular Transport Control of Signaling Networks

Biophysical journal, 2011-11, Vol.101 (10), p.2315-2323

2011

Volltextzugriff (PDF)

Ab initio thermodynamic modeling of distal multisite transcription regulation

Nucleic acids research, 2008-02, Vol.36 (3), p.726

2008

Volltextzugriff (PDF)

Determinants of population responses to environmental fluctuations

Scientific reports, 2018-01, Vol.8 (1), p.887-12, Article 887

2018

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Extraction and Refolding Determinants of Chaperone-Driven Aggregated Protein Reactivation

Journal of molecular biology, 2020-05, Vol.432 (10), p.3239-3250

2020

Volltextzugriff (PDF)

Dynamics-informed deconvolutional neural networks for super-resolution identification of regime changes in epidemiological time series

Science advances, 2023-07, Vol.9 (28), p.eadf0673-eadf0673

2023

Volltextzugriff (PDF)

Regulation of Human Hsc70 ATPase and Chaperone Activities by Apg2: Role of the Acidic Subdomain

Journal of molecular biology, 2019-01, Vol.431 (2), p.444-461

2019

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Intrinsic growth heterogeneity of mouse leukemia cells underlies differential susceptibility to a growth-inhibiting anticancer drug

PloS one, 2021-02, Vol.16 (2), p.e0236534-e0236534

2021

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Modeling Network Dynamics: The lac Operon, a Case Study

The Journal of cell biology, 2003-05, Vol.161 (3), p.471-476

2003

Volltextzugriff (PDF)

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Multi-landmark alignment of genomic signals reveals conserved expression patterns across transcription start sites

Synthetic cooperation in engineered yeast populations

Signal processing in the TGF-beta superfamily ligand-receptor network

Reliably quantifying the evolving worldwide dynamic state of the COVID-19 outbreak from death records, clinical parametrization, and demographic data

CplexA: a Mathematica package to study macromolecular-assembly control of gene expression

Entropy of Leukemia on Multidimensional Morphological and Molecular Landscapes

All-or-none amyloid disassembly via chaperone-triggered fibril unzipping favors clearance of α-synuclein toxic species

Ascertaining the initiation of epidemic resurgences: an application to the COVID-19 second surges in Europe and the Northeast United States

From molecular noise to behavioural variability in a single bacterium

Clearly Detectable, Kinetically Restricted Solid–Solid Phase Transition in cis-Ceramide Monolayers

Failure of the work-Hamiltonian connection for free-energy calculations

Inferring the in vivo Looping Properties of DNA

Reliable Prediction of Complex Phenotypes from a Modular Design in Free Energy Space: An Extensive Exploration of the lac Operon

Robustness of DNA looping across multiple cell divisions in individual bacteria

DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise

DNA looping: the consequences and its control

Control of gene expression by modulated self-assembly

Trafficking Coordinate Description of Intracellular Transport Control of Signaling Networks

Ab initio thermodynamic modeling of distal multisite transcription regulation

Determinants of population responses to environmental fluctuations

Extraction and Refolding Determinants of Chaperone-Driven Aggregated Protein Reactivation

Dynamics-informed deconvolutional neural networks for super-resolution identification of regime changes in epidemiological time series

Regulation of Human Hsc70 ATPase and Chaperone Activities by Apg2: Role of the Acidic Subdomain

Intrinsic growth heterogeneity of mouse leukemia cells underlies differential susceptibility to a growth-inhibiting anticancer drug

Modeling Network Dynamics: The lac Operon, a Case Study

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