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Single molecule studies characterize the kinetic mechanism of tetrameric p53 binding to different native response elements

PloS one, 2023-08, Vol.18 (8), p.e0286193-e0286193

2023

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Non-coding-RNA regulators of RNA polymerase II transcription

Nature reviews. Molecular cell biology, 2006-08, Vol.7 (8), p.612-616

2006

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Interactions of HMGB Proteins with the Genome and the Impact on Disease

Biomolecules (Basel, Switzerland), 2021-10, Vol.11 (10), p.1451

2021

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Finding the start site: redefining the human initiator element

Genes & development, 2017-01, Vol.31 (1), p.1-2

2017

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Mechanisms and Functions of the RNA Polymerase II General Transcription Machinery during the Transcription Cycle

Biomolecules (Basel, Switzerland), 2024-02, Vol.14 (2), p.176

2024

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Short‐term exposure to ethanol induces transcriptional changes in nontumorigenic breast cells

FEBS open bio, 2023-10, Vol.13 (10), p.1941-1952

2023

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Using electrophoretic mobility shift assays to measure equilibrium dissociation constants: GAL4‐p53 binding DNA as a model system

Biochemistry and molecular biology education, 2012-11, Vol.40 (6), p.383-387

2012

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ERK1/2 activation is a therapeutic target in age-related macular degeneration

Proceedings of the National Academy of Sciences - PNAS, 2012-08, Vol.109 (34), p.13781-13786

2012

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B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

Nature structural & molecular biology, 2004-09, Vol.11 (9), p.822-829

2004

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Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription

RNA (Cambridge), 2007-04, Vol.13 (4), p.583-596

2007

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The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection

Molecular and cellular biology, 2021-10, Vol.41 (10), p.e0017121-e0017121

2021

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Evaluating the Relationship between FRET Changes and Distance Changes Using DNA Length and Restriction Enzyme Specificity

Journal of chemical education, 2016-02, Vol.93 (2), p.383-386

2016

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Non-coding RNAs: key regulators of mammalian transcription

Trends in biochemical sciences (Amsterdam. Regular ed.), 2012-04, Vol.37 (4), p.144-151

2012

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Noncoding RNAs: Regulators of the Mammalian Transcription Machinery

Journal of molecular biology, 2016-06, Vol.428 (12), p.2652-2659

2016

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Heat Shock Causes a Reversible Increase in RNA Polymerase II Occupancy Downstream of mRNA Genes, Consistent with a Global Loss in Transcriptional Termination

Molecular and cellular biology, 2018-09, Vol.38 (18)

2018

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TFIIF Facilitates Dissociation of RNA Polymerase II from Noncoding RNAs That Lack a Repression Domain

Molecular and Cellular Biology, 2010-01, Vol.30 (1), p.91-97

2010

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The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts

Epigenomics, 2013-02, Vol.5 (1), p.95-102

2013

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Release of Human TFIIB from Actively Transcribing Complexes Is Triggered upon Synthesis of 7- and 9-nt RNAs

Journal of molecular biology, 2020-06, Vol.432 (14), p.4049-4060

2020

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Mechanical memory stored through epigenetic remodeling reduces cell therapeutic potential

Biophysical journal, 2023-04, Vol.122 (8), p.1428-1444

2023

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Monitoring transcriptional activity by RNA polymerase II in vitro using single molecule co-localization

Methods (San Diego, Calif.), 2019-04, Vol.159-160, p.45-50

2019

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Human Alu RNA Is a Modular Transacting Repressor of mRNA Transcription during Heat Shock

Molecular cell, 2008-02, Vol.29 (4), p.499-509

2008

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Genomic gems: SINE RNAs regulate mRNA production

Current opinion in genetics & development, 2010-04, Vol.20 (2), p.149-155

2010

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DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration

Nature (London), 2011-03, Vol.471 (7338), p.325-330

2011

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Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity

Nucleic acids research, 2016-09, Vol.44 (15), p.7132

2016

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Single molecule studies characterize the kinetic mechanism of tetrameric p53 binding to different native response elements

Non-coding-RNA regulators of RNA polymerase II transcription

Interactions of HMGB Proteins with the Genome and the Impact on Disease

Finding the start site: redefining the human initiator element

Mechanisms and Functions of the RNA Polymerase II General Transcription Machinery during the Transcription Cycle

Short‐term exposure to ethanol induces transcriptional changes in nontumorigenic breast cells

Using electrophoretic mobility shift assays to measure equilibrium dissociation constants: GAL4‐p53 binding DNA as a model system

ERK1/2 activation is a therapeutic target in age-related macular degeneration

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription

The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection

Evaluating the Relationship between FRET Changes and Distance Changes Using DNA Length and Restriction Enzyme Specificity

Non-coding RNAs: key regulators of mammalian transcription

Noncoding RNAs: Regulators of the Mammalian Transcription Machinery

Heat Shock Causes a Reversible Increase in RNA Polymerase II Occupancy Downstream of mRNA Genes, Consistent with a Global Loss in Transcriptional Termination

TFIIF Facilitates Dissociation of RNA Polymerase II from Noncoding RNAs That Lack a Repression Domain

The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts

Release of Human TFIIB from Actively Transcribing Complexes Is Triggered upon Synthesis of 7- and 9-nt RNAs

Mechanical memory stored through epigenetic remodeling reduces cell therapeutic potential

Monitoring transcriptional activity by RNA polymerase II in vitro using single molecule co-localization

DICER1 Loss and Alu RNA Induce Age-Related Macular Degeneration via the NLRP3 Inflammasome and MyD88

Human Alu RNA Is a Modular Transacting Repressor of mRNA Transcription during Heat Shock

Genomic gems: SINE RNAs regulate mRNA production

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration

Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity

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