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Shear viscosity of OPC and OPC3 water models

The Journal of chemical physics, 2023-09, Vol.159 (10)

Ando, Tadashi

2023

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Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

eLife, 2016-11, Vol.5

2016

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Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

Proceedings of the National Academy of Sciences - PNAS, 2010-10, Vol.107 (43), p.18457-18462

2010

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Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models

PLoS computational biology, 2014-12, Vol.10 (12), p.e1003990-e1003990

2014

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Hi-CO: 3D genome structure analysis with nucleosome resolution

Nature protocols, 2021-07, Vol.16 (7), p.3439-3469

2021

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Mechanism of Chiral-Selective Aminoacylation of an RNA Minihelix Explored by QM/MM Free-Energy Simulations

Life (Basel, Switzerland), 2023-03, Vol.13 (3), p.722

2023

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Molecular Dynamics Study on Behavior of Resist Molecules in UV-Nanoimprint Lithography Filling Process

Nanomaterials (Basel, Switzerland), 2022-07, Vol.12 (15), p.2554

2022

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Chirality in Planar Cell Shape Contributes to Left-Right Asymmetric Epithelial Morphogenesis

Science (American Association for the Advancement of Science), 2011-07, Vol.333 (6040), p.339-341

2011

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Adaptive Dynamics Simulation of Interference Phenomenon for Physical and Biological Systems

Entropy (Basel, Switzerland), 2023-10, Vol.25 (11), p.1487

2023

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Cooperative regulation of endocytic vesicle transport by yeast Eps15-like protein Pan1p and epsins

The Journal of biological chemistry, 2021-11, Vol.297 (5), p.101254-101254, Article 101254

2021

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DNA double-strand breaks alter the spatial arrangement of homologous loci in plant cells

Scientific reports, 2015-06, Vol.5 (1), p.11058-11058, Article 11058

2015

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The crystal structure of the tetrameric human vasohibin‐1–SVBP complex reveals a variable arm region within the structural core

Acta crystallographica. Section D, Biological crystallography., 2020-10, Vol.76 (10), p.993-1000

2020

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Molecular Anatomy of the Class I Ligase Ribozyme for Elucidation of the Activity-Generating Unit

Biology (Basel, Switzerland), 2023-07, Vol.12 (7), p.1012

2023

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Molecular Dynamics Simulation of the Resist Filling Process in UV-nanoimprint Lithography

Journal of Photopolymer Science and Technology, 2021/06/11, Vol.34(2), pp.139-144

2021

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G:U-Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl-tRNA Synthetase: An Insight into the Evolution of Aminoacyl-tRNA Synthetases

Journal of molecular evolution, 2020-08, Vol.88 (6), p.501-509

2020

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Modes I and II interlaminar fracture toughness and fatigue delamination of CF/epoxy laminates with self-same epoxy interleaf

International journal of fatigue, 2006-10, Vol.28 (10), p.1154-1165

2006

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A 3D-Simulation and Experimental Study of the Fluid Flow Around a Nano-Step Structure Formed by UV-NIL

Journal of Photopolymer Science and Technology, 2022/12/16, Vol.35(2), pp.111-116

2022

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Effects of a superoptimal temperature on aquacultured yellowtail Seriola quinqueradiata

Fisheries science, 2018-11, Vol.84 (6), p.1063-1071

2018

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Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation

Biochemical and biophysical research communications, 2019-04, Vol.511 (2), p.228-233

2019

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Correction to: G:U‑Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl‑tRNA Synthetase: An Insight into the Evolution of Aminoacyl‑tRNA Synthetases

Journal of molecular evolution, 2020-12, Vol.88 (10), p.759-760

2020

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Peptide Bond Formation between Aminoacyl-Minihelices by a Scaffold Derived from the Peptidyl Transferase Center

Life (Basel, Switzerland), 2022-04, Vol.12 (4), p.573

2022

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RNA Aptamers for a tRNA-Binding Protein from Aeropyrum pernix with Homologous Counterparts Distributed Throughout Evolution

Life (Basel, Switzerland), 2020-02, Vol.10 (2), p.11

2020

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On the Importance of Hydrodynamic Interactions in Lipid Membrane Formation

Biophysical journal, 2013-01, Vol.104 (1), p.96-105

2013

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A patient with a 6q22.1 deletion and a phenotype of non-progressive early-onset generalized epilepsy with tremor

Epilepsy & behavior reports, 2021-01, Vol.15, p.100405-100405, Article 100405

2021

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Role of Asp187 and Gln190 in the Na+/proline symporter (PutP) of Escherichia coli

Journal of biochemistry (Tokyo), 2011-10, Vol.150 (4), p.395-402

2011

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Shear viscosity of OPC and OPC3 water models

Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models

Hi-CO: 3D genome structure analysis with nucleosome resolution

Mechanism of Chiral-Selective Aminoacylation of an RNA Minihelix Explored by QM/MM Free-Energy Simulations

Molecular Dynamics Study on Behavior of Resist Molecules in UV-Nanoimprint Lithography Filling Process

Chirality in Planar Cell Shape Contributes to Left-Right Asymmetric Epithelial Morphogenesis

Adaptive Dynamics Simulation of Interference Phenomenon for Physical and Biological Systems

Cooperative regulation of endocytic vesicle transport by yeast Eps15-like protein Pan1p and epsins

DNA double-strand breaks alter the spatial arrangement of homologous loci in plant cells

The crystal structure of the tetrameric human vasohibin‐1–SVBP complex reveals a variable arm region within the structural core

Molecular Anatomy of the Class I Ligase Ribozyme for Elucidation of the Activity-Generating Unit

Molecular Dynamics Simulation of the Resist Filling Process in UV-nanoimprint Lithography

G:U-Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl-tRNA Synthetase: An Insight into the Evolution of Aminoacyl-tRNA Synthetases

Modes I and II interlaminar fracture toughness and fatigue delamination of CF/epoxy laminates with self-same epoxy interleaf

A 3D-Simulation and Experimental Study of the Fluid Flow Around a Nano-Step Structure Formed by UV-NIL

Effects of a superoptimal temperature on aquacultured yellowtail Seriola quinqueradiata

Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation

Correction to: G:U‑Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl‑tRNA Synthetase: An Insight into the Evolution of Aminoacyl‑tRNA Synthetases

Peptide Bond Formation between Aminoacyl-Minihelices by a Scaffold Derived from the Peptidyl Transferase Center

RNA Aptamers for a tRNA-Binding Protein from Aeropyrum pernix with Homologous Counterparts Distributed Throughout Evolution

On the Importance of Hydrodynamic Interactions in Lipid Membrane Formation

A patient with a 6q22.1 deletion and a phenotype of non-progressive early-onset generalized epilepsy with tremor

Role of Asp187 and Gln190 in the Na+/proline symporter (PutP) of Escherichia coli

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