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Organizational principles of 3D genome architecture

Nature reviews. Genetics, 2018-12, Vol.19 (12), p.789-800

2018

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A SWI/SNF Chromatin-Remodeling Complex Acts in Noncoding RNA-Mediated Transcriptional Silencing

Molecular cell, 2013-01, Vol.49 (2), p.298-309

2013

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Evolutionarily Conserved Principles Predict 3D Chromatin Organization

Molecular cell, 2017-09, Vol.67 (5), p.837-852.e7

2017

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Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

Genes & development, 2012-08, Vol.26 (16), p.1825-1836

2012

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Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

Genome research, 2020-03, Vol.30 (3), p.447-458

2020

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The three-dimensional genome: principles and roles of long-distance interactions

Current opinion in cell biology, 2016-06, Vol.40, p.8-14

2016

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A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis

Molecular cell, 2016-01, Vol.61 (2), p.222-235

2016

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Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress

Molecular cell, 2018-09, Vol.71 (6), p.940-955.e7

2018

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Widespread long-range cis-regulatory elements in the maize genome

Nature plants, 2019-12, Vol.5 (12), p.1237-1249

2019

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Mechanistic drivers of chromatin organization into compartments

Current opinion in genetics & development, 2024-06, Vol.86, p.102193-102193, Article 102193

2024

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Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin

eLife, 2016-10, Vol.5

2016

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Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

Nucleic acids research, 2017-02, Vol.45 (4), p.1714-1730

2017

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Sex-specific multi-level 3D genome dynamics in the mouse brain

Nature communications, 2022-06, Vol.13 (1), p.3438-3438, Article 3438

2022

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Regulation of CTCF loop formation during pancreatic cell differentiation

Nature communications, 2023-10, Vol.14 (1), p.6314-6314, Article 6314

2023

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Pre-Rate-Determining Selectivity in the Terpolymerization of Epoxides, Cyclic Anhydrides, and CO₂: A One-Step Route to Diblock Copolymers

Angewandte Chemie (International ed.), 2008-01, Vol.47 (32), p.6041-6044

2008

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Video Analysis of Otologic Instrument Movement During Resident Mastoidectomies

Otology & neurotology, 2022-12, Vol.43 (10), p.e1115-e1120

2022

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The zinc-finger protein Z4 cooperates with condensin II to regulate somatic chromosome pairing and 3D chromatin organization

Nucleic acids research, 2024-03

2024

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Long-range control of gene expression via RNA-directed DNA methylation

PLoS genetics, 2017-05, Vol.13 (5), p.e1006749-e1006749

2017

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CloudATAC: a cloud-based framework for ATAC-Seq data analysis

Briefings in bioinformatics, 2024-07, Vol.25 (Supplement_1)

2024

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An environmentally relevant mixture of per- and polyfluoroalkyl substances (PFAS) impacts proliferation, steroid hormone synthesis, and gene transcription in primary human granulosa cells

Toxicological sciences, 2024-06, Vol.200 (1), p.57-69

2024

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RNA polymerase V targets transcriptional silencing components to promoters of protein‐coding genes

The Plant journal : for cell and molecular biology, 2013-01, Vol.73 (2), p.179-189

2013

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Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in Anopheles gambiae

Scientific reports, 2017-01, Vol.7 (1), p.40655-40655, Article 40655

2017

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Generalized Hypermobility, Knee Hyperextension, and Outcomes After Anterior Cruciate Ligament Reconstruction: Prospective, Case-Control Study With Mean 6 Years Follow-up

Arthroscopy, 2017-10, Vol.33 (10), p.1852-1858

2017

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RNA‐directed DNA methylation requires stepwise binding of silencing factors to long non‐coding RNA

The Plant journal : for cell and molecular biology, 2014-07, Vol.79 (2), p.181-191

2014

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Glutamate and GABA synthesis, release, transport and metabolism as targets for seizure control

Neurochemistry international, 2012-09, Vol.61 (4), p.546-558

2012

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Organizational principles of 3D genome architecture

A SWI/SNF Chromatin-Remodeling Complex Acts in Noncoding RNA-Mediated Transcriptional Silencing

Evolutionarily Conserved Principles Predict 3D Chromatin Organization

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

The three-dimensional genome: principles and roles of long-distance interactions

A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis

Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress

Widespread long-range cis-regulatory elements in the maize genome

Mechanistic drivers of chromatin organization into compartments

Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

Sex-specific multi-level 3D genome dynamics in the mouse brain

Regulation of CTCF loop formation during pancreatic cell differentiation

Pre-Rate-Determining Selectivity in the Terpolymerization of Epoxides, Cyclic Anhydrides, and CO₂: A One-Step Route to Diblock Copolymers

Video Analysis of Otologic Instrument Movement During Resident Mastoidectomies

The zinc-finger protein Z4 cooperates with condensin II to regulate somatic chromosome pairing and 3D chromatin organization

Long-range control of gene expression via RNA-directed DNA methylation

CloudATAC: a cloud-based framework for ATAC-Seq data analysis

An environmentally relevant mixture of per- and polyfluoroalkyl substances (PFAS) impacts proliferation, steroid hormone synthesis, and gene transcription in primary human granulosa cells

RNA polymerase V targets transcriptional silencing components to promoters of protein‐coding genes

Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in Anopheles gambiae

Generalized Hypermobility, Knee Hyperextension, and Outcomes After Anterior Cruciate Ligament Reconstruction: Prospective, Case-Control Study With Mean 6 Years Follow-up

RNA‐directed DNA methylation requires stepwise binding of silencing factors to long non‐coding RNA

Glutamate and GABA synthesis, release, transport and metabolism as targets for seizure control

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