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Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses

PloS one, 2017-05, Vol.12 (5), p.e0178199-e0178199

2017

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Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14

mSystems, 2023-02, Vol.8 (1), p.e0034222-e0034222

2023

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Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia

mSystems, 2023-02, Vol.8 (1), p.e0034122-e0034122

2023

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Application of Traditional Vaccine Development Strategies to SARS-CoV-2

mSystems, 2023-04, Vol.8 (2), p.e0092722

2023

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SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses

Genomics, proteomics & bioinformatics, 2022-10, Vol.20 (5), p.912-927

2022

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Using genome-wide expression compendia to study microorganisms

Computational and structural biotechnology journal, 2022-01, Vol.20, p.4315-4324

2022

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Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans

Journal of virology, 2015-05, Vol.89 (10), p.5427-5440

2015

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CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies

Scientific data, 2022-06, Vol.9 (1), p.343-343, Article 343

2022

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Identification and Development of Therapeutics for COVID-19

mSystems, 2021-12, Vol.6 (6), p.e0023321-e0023321

2021

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The Coming of Age of Nucleic Acid Vaccines during COVID-19

mSystems, 2023-04, Vol.8 (2), p.e0092822-e0092822

2023

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Influenza Research Database: An integrated bioinformatics resource for influenza virus research

Nucleic acids research, 2017-01, Vol.45 (D1), p.D466-D474

2017

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Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells

Frontiers in immunology, 2017-07, Vol.8, p.858-858

2017

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Pseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin

Proceedings of the National Academy of Sciences - PNAS, 2020-02, Vol.117 (6), p.3167-3173

2020

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Still Not SAFE? A Propensity Score Matched Analysis of Colloid Use in Traumatic Brain Injury

The American surgeon, 2023-12, Vol.89 (12), p.6403-6406

2023

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Correcting for experiment-specific variability in expression compendia can remove underlying signals

Gigascience, 2020-11, Vol.9 (11)

2020

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DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data

Cytometry. Part A, 2018-06, Vol.93 (6), p.597-610

2018

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Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak

Virus evolution, 2016-01, Vol.2 (1), p.vew015-vew015

2016

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Ten quick tips for deep learning in biology

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009803-e1009803

2022

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Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment

mSystems, 2021-05, Vol.6 (3)

2021

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Sequential Application of Anticancer Drugs Enhances Cell Death by Rewiring Apoptotic Signaling Networks

Cell, 2012-05, Vol.149 (4), p.780-794

2012

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Broadly neutralizing antibody PGT121 allosterically modulates CD4 binding via recognition of the HIV-1 gp120 V3 base and multiple surrounding glycans

PLoS pathogens, 2013-05, Vol.9 (5), p.e1003342

2013

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Internalized weight bias and psychological wellbeing: An exploratory investigation of a preliminary model

PloS one, 2019-05, Vol.14 (5), p.e0216324-e0216324

2019

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Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses

Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14

Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses

Using genome-wide expression compendia to study microorganisms

Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans

CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies

Identification and Development of Therapeutics for COVID-19

The Coming of Age of Nucleic Acid Vaccines during COVID-19

Influenza Research Database: An integrated bioinformatics resource for influenza virus research

Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells

Pseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin

Still Not SAFE? A Propensity Score Matched Analysis of Colloid Use in Traumatic Brain Injury

Correcting for experiment-specific variability in expression compendia can remove underlying signals

DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure"

Ten quick tips for deep learning in biology

Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment

Sequential Application of Anticancer Drugs Enhances Cell Death by Rewiring Apoptotic Signaling Networks

Broadly neutralizing antibody PGT121 allosterically modulates CD4 binding via recognition of the HIV-1 gp120 V3 base and multiple surrounding glycans

Internalized weight bias and psychological wellbeing: An exploratory investigation of a preliminary model

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