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Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine–lysine distances

Protein science, 2014-06, Vol.23 (6), p.747-759

2014

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High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform

Analytical chemistry (Washington), 2019-10, Vol.91 (20), p.13119-13127

2019

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Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

BMC bioinformatics, 2009-03, Vol.10 (1), p.87-87, Article 87

2009

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Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions

Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (25), p.10153-10158

2013

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An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis

Proteomics (Weinheim), 2005-08, Vol.5 (13), p.3475-3490

2005

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Distinct cerebrospinal fluid proteomes differentiate post-treatment lyme disease from chronic fatigue syndrome

PloS one, 2011-02, Vol.6 (2), p.e17287-e17287

2011

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Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

Bioinformatics, 2009-10, Vol.25 (19), p.2573-2580

2009

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Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH

ACS omega, 2021-05, Vol.6 (19), p.12660-12666

2021

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Discovery of Novel Glucose-Regulated Proteins in Isolated Human Pancreatic Islets Using LC–MS/MS-Based Proteomics

Journal of proteome research, 2012-07, Vol.11 (7), p.3520-3532

2012

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Comparative bacterial proteomics: analysis of the core genome concept

PloS one, 2008-02, Vol.3 (2), p.e1542-e1542

2008

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Phosphoproteome Profiling of Human Skin Fibroblast Cells in Response to Low- and High-Dose Irradiation

Journal of proteome research, 2006-05, Vol.5 (5), p.1252-1260

2006

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New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells

Analyst (London), 2019-01, Vol.144 (3), p.794-87

2019

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The landscape of viral proteomics and its potential to impact human health

Expert review of proteomics, 2016-06, Vol.13 (6), p.579-591

2016

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Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

BMC genomics, 2011-08, Vol.12 (1), p.433-433, Article 433

2011

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Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach

Molecular & cellular proteomics, 2006-04, Vol.5 (4), p.714-725

2006

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Preserved and variable spatial‐chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade

Plant-environment interactions (Hoboken, N.J. : 2018), 2021-02, Vol.2 (1), p.28-35

2021

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Proteomics Analysis of the Causative Agent of Typhoid Fever

Journal of proteome research, 2008-02, Vol.7 (2), p.546-557

2008

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Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics

Journal of proteome research, 2006-11, Vol.5 (11), p.3008-3017

2006

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A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

Proteomics (Weinheim), 2005-08, Vol.5 (13), p.3454-3466

2005

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Proteomic biomarkers in plasma that differentiate rapid and slow decline in lung function in adult cigarette smokers with chronic obstructive pulmonary disease (COPD)

Analytical and bioanalytical chemistry, 2010-07, Vol.397 (5), p.1809-1819

2010

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Utilizing Human Blood Plasma for Proteomic Biomarker Discovery

Journal of proteome research, 2005-07, Vol.4 (4), p.1073-1085

2005

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Identification of Cross-Linked Peptides after Click-Based Enrichment Using Sequential Collision-Induced Dissociation and Electron Transfer Dissociation Tandem Mass Spectrometry

Analytical chemistry (Washington), 2009-07, Vol.81 (13), p.5524-5532

2009

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Xlink-Identifier: An Automated Data Analysis Platform for Confident Identifications of Chemically Cross-Linked Peptides Using Tandem Mass Spectrometry

Journal of proteome research, 2011-03, Vol.10 (3), p.923-931

2011

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Cross-linking and mass spectrometry methodologies to facilitate structural biology: finding a path through the maze

Journal of structural and functional genomics, 2013-09, Vol.14 (3), p.77-90

2013

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Polysialylated N‑Glycans Identified in Human Serum Through Combined Developments in Sample Preparation, Separations, and Electrospray Ionization-Mass Spectrometry

Analytical chemistry (Washington), 2014-09, Vol.86 (17), p.8700-8710

2014

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Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine–lysine distances

High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis

Distinct cerebrospinal fluid proteomes differentiate post-treatment lyme disease from chronic fatigue syndrome

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH

Discovery of Novel Glucose-Regulated Proteins in Isolated Human Pancreatic Islets Using LC–MS/MS-Based Proteomics

Comparative bacterial proteomics: analysis of the core genome concept

Phosphoproteome Profiling of Human Skin Fibroblast Cells in Response to Low- and High-Dose Irradiation

New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells

The landscape of viral proteomics and its potential to impact human health

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach

Preserved and variable spatial‐chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade

Proteomics Analysis of the Causative Agent of Typhoid Fever

Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics

A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

Proteomic biomarkers in plasma that differentiate rapid and slow decline in lung function in adult cigarette smokers with chronic obstructive pulmonary disease (COPD)

Utilizing Human Blood Plasma for Proteomic Biomarker Discovery

Identification of Cross-Linked Peptides after Click-Based Enrichment Using Sequential Collision-Induced Dissociation and Electron Transfer Dissociation Tandem Mass Spectrometry

Xlink-Identifier: An Automated Data Analysis Platform for Confident Identifications of Chemically Cross-Linked Peptides Using Tandem Mass Spectrometry

Cross-linking and mass spectrometry methodologies to facilitate structural biology: finding a path through the maze

Polysialylated N‑Glycans Identified in Human Serum Through Combined Developments in Sample Preparation, Separations, and Electrospray Ionization-Mass Spectrometry

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