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Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine–lysine distances

Protein science, 2014-06, Vol.23 (6), p.747-759

2014

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Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

BMC bioinformatics, 2009-03, Vol.10 (1), p.87-87, Article 87

2009

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Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

Molecular systems biology, 2010, Vol.6 (1), p.390-n/a

2010

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DAnTE: a statistical tool for quantitative analysis of -omics data

Bioinformatics, 2008-07, Vol.24 (13), p.1556-1558

2008

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efam: an expanded, metaproteome-supported HMM profile database of viral protein families

Bioinformatics (Oxford, England), 2021-11, Vol.37 (22), p.4202-4208

2021

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An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis

Proteomics (Weinheim), 2005-08, Vol.5 (13), p.3475-3490

2005

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Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature

International journal of molecular sciences, 2020-06, Vol.21 (12), p.4461

2020

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VIPER: an advanced software package to support high-throughput LC-MS peptide identification

Bioinformatics, 2007-08, Vol.23 (15), p.2021-2023

2007

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Unified feature association networks through integration of transcriptomic and proteomic data

PLoS computational biology, 2019-09, Vol.15 (9), p.e1007241-e1007241

2019

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Characterization of Local and Systemic Impact of Whitefly ( Bemisia tabaci ) Feeding and Whitefly-Transmitted Tomato Mottle Virus Infection on Tomato Leaves by Comprehensive Proteomics

International journal of molecular sciences, 2020-10, Vol.21 (19), p.7241

2020

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Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

Bioinformatics, 2009-10, Vol.25 (19), p.2573-2580

2009

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An optimized approach and inflation media for obtaining complimentary mass spectrometry-based omics data from human lung tissue

Frontiers in molecular biosciences, 2022-11, Vol.9, p.1022775-1022775

2022

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Discovery of Novel Glucose-Regulated Proteins in Isolated Human Pancreatic Islets Using LC–MS/MS-Based Proteomics

Journal of proteome research, 2012-07, Vol.11 (7), p.3520-3532

2012

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The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions

Biochimica et biophysica acta, 2006-07, Vol.1764 (7), p.1198-1206

2006

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Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: Systematic variation between sample types and calibration of mass spectrometry data

Proteomics (Weinheim), 2005-08, Vol.5 (13), p.3278-3291

2005

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Global Analysis of Salmonella Alternative Sigma Factor E on Protein Translation

Journal of proteome research, 2015-04, Vol.14 (4), p.1716-1726

2015

Volltextzugriff (PDF)

Phosphoproteome Profiling of Human Skin Fibroblast Cells in Response to Low- and High-Dose Irradiation

Journal of proteome research, 2006-05, Vol.5 (5), p.1252-1260

2006

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The landscape of viral proteomics and its potential to impact human health

Expert review of proteomics, 2016-06, Vol.13 (6), p.579-591

2016

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Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach

Molecular & cellular proteomics, 2006-04, Vol.5 (4), p.714-725

2006

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A multi-omic systems approach to elucidating Yersinia virulence mechanisms

Molecular bioSystems, 2013-01, Vol.9 (1), p.44-54

2013

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Proteomics Analysis of the Causative Agent of Typhoid Fever

Journal of proteome research, 2008-02, Vol.7 (2), p.546-557

2008

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Individual Variability of Protein Expression in Human Tissues

Journal of proteome research, 2018-11, Vol.17 (11), p.3914-3922

2018

Volltextzugriff (PDF)

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

Genome Research, 2007-09, Vol.17 (9), p.1362-1377

2007

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A statistical framework for protein quantitation in bottom-up MS-based proteomics

Bioinformatics, 2009-08, Vol.25 (16), p.2028-2034

2009

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Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry

Molecular & cellular proteomics, 2002-12, Vol.1 (12), p.947-955

2002

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Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine–lysine distances

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

DAnTE: a statistical tool for quantitative analysis of -omics data

efam: an expanded, metaproteome-supported HMM profile database of viral protein families

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis

Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

Unified feature association networks through integration of transcriptomic and proteomic data

Characterization of Local and Systemic Impact of Whitefly ( Bemisia tabaci ) Feeding and Whitefly-Transmitted Tomato Mottle Virus Infection on Tomato Leaves by Comprehensive Proteomics

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

An optimized approach and inflation media for obtaining complimentary mass spectrometry-based omics data from human lung tissue

Discovery of Novel Glucose-Regulated Proteins in Isolated Human Pancreatic Islets Using LC–MS/MS-Based Proteomics

The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions

Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: Systematic variation between sample types and calibration of mass spectrometry data

Global Analysis of Salmonella Alternative Sigma Factor E on Protein Translation

Phosphoproteome Profiling of Human Skin Fibroblast Cells in Response to Low- and High-Dose Irradiation

The landscape of viral proteomics and its potential to impact human health

Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach

A multi-omic systems approach to elucidating Yersinia virulence mechanisms

Proteomics Analysis of the Causative Agent of Typhoid Fever

Individual Variability of Protein Expression in Human Tissues

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

A statistical framework for protein quantitation in bottom-up MS-based proteomics

Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry

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