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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Nature communications, 2019-08, Vol.10 (1), p.3586-13, Article 3586

2019

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Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Nature communications, 2022-06, Vol.13 (1), p.3766-3766, Article 3766

2022

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Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Nature communications, 2022-05, Vol.13 (1), p.2969-2969, Article 2969

2022

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Validated Growth Rate-Dependent Regulation of Lipid Metabolism in Yarrowia lipolytica

International journal of molecular sciences, 2022-08, Vol.23 (15), p.8517

2022

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Resin acids play key roles in shaping microbial communities during degradation of spruce bark

Nature communications, 2023-12, Vol.14 (1), p.8171-8171, Article 8171

2023

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Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica

Biotechnology reports (Amsterdam, Netherlands), 2020-09, Vol.27, p.e00521-e00521, Article e00521

2020

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Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints

Current opinion in microbiology, 2022-08, Vol.68, p.102168-102168, Article 102168

Kerkhoven, Eduard J

2022

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A Pan-Draft Metabolic Model Reflects Evolutionary Diversity across 332 Yeast Species

Biomolecules (Basel, Switzerland), 2022-11, Vol.12 (11), p.1632

2022

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Investigating the Influence of Glycerol on the Utilization of Glucose in Yarrowia lipolytica Using RNA-Seq-Based Transcriptomics

G3 : genes - genomes - genetics, 2019-12, Vol.9 (12), p.4059-4071

2019

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Urea is a drop-in nitrogen source alternative to ammonium sulphate in Yarrowia lipolytica

iScience, 2022-12, Vol.25 (12), p.105703-105703, Article 105703

2022

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Systems‐level approaches for understanding and engineering of the oleaginous cell factory Yarrowia lipolytica

Biotechnology and bioengineering, 2021-10, Vol.118 (10), p.3640-3654

2021

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Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

iScience, 2021-11, Vol.24 (11), p.103294-103294, Article 103294

2021

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Rewiring Saccharomyces cerevisiae metabolism for optimised Taxol® precursors production

Metabolic engineering communications, 2024-06, Vol.18, p.e00229-e00229, Article e00229

2024

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Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (51)

2021

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Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Nature communications, 2020-10, Vol.11 (1), p.5443-5443, Article 5443

2020

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Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

iScience, 2020-09, Vol.23 (9), p.101525-101525, Article 101525

2020

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Editorial: Multi-Omics Technologies for Optimizing Synthetic Biomanufacturing

Frontiers in bioengineering and biotechnology, 2021-12, Vol.9, p.818010-818010

2021

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Single-cell omics analysis with genome-scale metabolic modeling

Current opinion in biotechnology, 2024-04, Vol.86, p.103078-103078, Article 103078

2024

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Advancing metabolic engineering of Yarrowia lipolytica using the CRISPR/Cas system

Applied microbiology and biotechnology, 2018-11, Vol.102 (22), p.9541-9548

2018

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Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

mSphere, 2018-12, Vol.3 (6)

2018

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Abolishing storage lipids induces protein misfolding and stress responses in Yarrowia lipolytica

Journal of industrial microbiology & biotechnology, 2023-02, Vol.50 (1)

2023

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Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass

Metabolic engineering, 2024-07, Vol.84, p.23-33

2024

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Advances in genome-scale metabolic models of industrially important fungi

Current opinion in biotechnology, 2023-12, Vol.84, p.103005-103005, Article 103005

2023

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Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Nature protocols, 2024-03, Vol.19 (3), p.629-667

2024

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Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Proceedings of the National Academy of Sciences - PNAS, 2023-02, Vol.120 (6), p.e2217868120-e2217868120

2023

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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Validated Growth Rate-Dependent Regulation of Lipid Metabolism in Yarrowia lipolytica

Resin acids play key roles in shaping microbial communities during degradation of spruce bark

Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica

Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints

A Pan-Draft Metabolic Model Reflects Evolutionary Diversity across 332 Yeast Species

Investigating the Influence of Glycerol on the Utilization of Glucose in Yarrowia lipolytica Using RNA-Seq-Based Transcriptomics

Urea is a drop-in nitrogen source alternative to ammonium sulphate in Yarrowia lipolytica

Systems‐level approaches for understanding and engineering of the oleaginous cell factory Yarrowia lipolytica

Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

Rewiring Saccharomyces cerevisiae metabolism for optimised Taxol® precursors production

Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

Editorial: Multi-Omics Technologies for Optimizing Synthetic Biomanufacturing

Single-cell omics analysis with genome-scale metabolic modeling

Advancing metabolic engineering of Yarrowia lipolytica using the CRISPR/Cas system

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

Abolishing storage lipids induces protein misfolding and stress responses in Yarrowia lipolytica

Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass

Advances in genome-scale metabolic models of industrially important fungi

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

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