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A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data

Proteomics (Weinheim), 2023-09, Vol.23 (17), p.e2200341-n/a

2023

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Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

Nature communications, 2021-08, Vol.12 (1), p.4676-4676, Article 4676

2021

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Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2

Science (American Association for the Advancement of Science), 2020-12, Vol.370 (6523), p.1479-1484

2020

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The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor

Viruses, 2020-04, Vol.12 (5), p.497

2020

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NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning

Frontiers in immunology, 2022-08, Vol.13, p.958584-958584

2022

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Integrative Structure Modeling: Overview and Assessment

Annual review of biochemistry, 2019-06, Vol.88, p.113

2019

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Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

Biophysical journal, 2013-08, Vol.105 (4), p.962-974

2013

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Uncertainty in integrative structural modeling

Current opinion in structural biology, 2014-10, Vol.28, p.96-104

2014

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An integrated suite of fast docking algorithms

Proteins, structure, function, and bioinformatics, 2010-11, Vol.78 (15), p.3197-3204

2010

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De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A

American journal of medical genetics. Part B, Neuropsychiatric genetics, 2020-10, Vol.183 (7), p.412-422

2020

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Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

PLoS biology, 2012-01, Vol.10 (1), p.e1001244-e1001244

2012

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ModBase, a database of annotated comparative protein structure models and associated resources

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D336

2014

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Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex

eLife, 2016-10, Vol.5

2016

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Integrative modelling of structure and dynamics of macromolecules based on SAXS profiles and cross-linking mass spectrometry

Acta crystallographica. Section A, Foundations and advances, 2021-08, Vol.77 (a2), p.C682-C682

Schneidman, Dina

2021

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CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites

Journal of molecular biology, 2016-02, Vol.428 (4), p.709-719

2016

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Macromolecular docking restrained by a small angle X-ray scattering profile

Journal of structural biology, 2011-03, Vol.173 (3), p.461-471

2011

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Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2

Proceedings of the National Academy of Sciences - PNAS, 2021-08, Vol.118 (34), p.1

2021

Volltextzugriff (PDF)

Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1

Proceedings of the National Academy of Sciences - PNAS, 2017-02, Vol.114 (7), p.1560-1565

2017

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Cryo-EM structures of engineered active bc 1-cbb 3 type CIII2CIV super-complexes and electronic communication between the complexes

Nature communications, 2021-12, Vol.12 (1), p.1-14

2021

Volltextzugriff (PDF)

Modeling Protein Conformational Changes with SAXS Profiles

Biophysical journal, 2018-02, Vol.114 (3), p.66a-66a

Schneidman, Dina

2018

Volltextzugriff (PDF)

DksA regulates RNA polymerase in Escherichia coli through a network of interactions in the secondary channel that includes Sequence Insertion 1

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (50), p.E6862-E6871

2015

Volltextzugriff (PDF)

Mechanism of Two Classes of Cancer Mutations in the Phosphoinositide 3-Kinase Catalytic Subunit

Science (American Association for the Advancement of Science), 2007-07, Vol.317 (5835), p.239-242

2007

Volltextzugriff (PDF)

Cross-activating c-Met/β1 integrin complex drives metastasis and invasive resistance in cancer

Proceedings of the National Academy of Sciences - PNAS, 2017-10, Vol.114 (41), p.E8685-E8694

2017

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Integrative structure determination reveals functional global flexibility for an ultra-multimodular arabinanase

Communications biology, 2022-05, Vol.5 (1), p.465-14, Article 465

2022

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Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies

Cell systems, 2021-03, Vol.12 (3), p.220-234.e9

2021

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A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2

The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor

NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning

Integrative Structure Modeling: Overview and Assessment

Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

Uncertainty in integrative structural modeling

An integrated suite of fast docking algorithms

De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

ModBase, a database of annotated comparative protein structure models and associated resources

Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex

Integrative modelling of structure and dynamics of macromolecules based on SAXS profiles and cross-linking mass spectrometry

CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites

Macromolecular docking restrained by a small angle X-ray scattering profile

Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2

Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1

Cryo-EM structures of engineered active bc 1-cbb 3 type CIII2CIV super-complexes and electronic communication between the complexes

Modeling Protein Conformational Changes with SAXS Profiles

DksA regulates RNA polymerase in Escherichia coli through a network of interactions in the secondary channel that includes Sequence Insertion 1

Mechanism of Two Classes of Cancer Mutations in the Phosphoinositide 3-Kinase Catalytic Subunit

Cross-activating c-Met/β1 integrin complex drives metastasis and invasive resistance in cancer

Integrative structure determination reveals functional global flexibility for an ultra-multimodular arabinanase

Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies

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