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High Throughput Sequencing of Extracellular RNA from Human Plasma

PloS one, 2017-01, Vol.12 (1), p.e0164644-e0164644

2017

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WebMeV: A Cloud Platform for Analyzing and Visualizing Cancer Genomic Data

Cancer research (Chicago, Ill.), 2017-11, Vol.77 (21), p.e11-e14

2017

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BRCA1 and RNAi factors promote repair mediated by small RNAs and PALB2–RAD52

Nature (London), 2021-03, Vol.591 (7851), p.665-670

2021

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Global epigenetic regulation of microRNAs in multiple myeloma

PloS one, 2014-10, Vol.9 (10), p.e110973

2014

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Protective HLA Class I Alleles That Restrict Acute-Phase CD8+ T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodeficiency Virus Type 1

Journal of Virology, 2009-02, Vol.83 (4), p.1845-1855

2009

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Structural and Functional Constraints Limit Options for Cytotoxic T-Lymphocyte Escape in the Immunodominant HLA-B27-Restricted Epitope in Human Immunodeficiency Virus Type 1 Capsid

Journal of Virology, 2008-06, Vol.82 (11), p.5594-5605

2008

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Genetic Characterization of Human Immunodeficiency Virus Type 1 in Elite Controllers: Lack of Gross Genetic Defects or Common Amino Acid Changes

Journal of Virology, 2008-09, Vol.82 (17), p.8422-8430

2008

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Transcriptional elongation requires DNA break-induced signalling

Nature communications, 2015-12, Vol.6 (1), p.10191-10191, Article 10191

2015

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Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling

Nature biotechnology, 2018-09, Vol.36 (8), p.746-757

2018

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PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments

BMC bioinformatics, 2007-10, Vol.8 (1), p.381-381, Article 381

2007

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A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers

Nature (London), 2011-06, Vol.474 (7350), p.230-234

2011

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Compensatory Mutations Restore the Replication Defects Caused by Cytotoxic T Lymphocyte Escape Mutations in Hepatitis C Virus Polymerase

Journal of Virology, 2011-11, Vol.85 (22), p.11883-11890

2011

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Transmission and Long-Term Stability of Compensated CD8 Escape Mutations

Journal of Virology, 2009-04, Vol.83 (8), p.3993-3997

2009

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Kinase-independent function of E-type cyclins in liver cancer

Proceedings of the National Academy of Sciences - PNAS, 2018-01, Vol.115 (5), p.1015-1020

2018

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RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes

Genomics (San Diego, Calif.), 2016-08, Vol.108 (2), p.64-77

2016

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HIF activation causes synthetic lethality between the VHL tumor suppressor and the EZH1 histone methyltransferase

Science translational medicine, 2017-07, Vol.9 (398)

2017

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Next-generation sequencing and microarray-based interrogation of microRNAs from formalin-fixed, paraffin-embedded tissue: Preliminary assessment of cross-platform concordance

Genomics (San Diego, Calif.), 2013-07, Vol.102 (1), p.8-14

2013

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The cyclin D1-CDK4 oncogenic interactome enables identification of potential novel oncogenes and clinical prognosis

Cell cycle (Georgetown, Tex.), 2014-09, Vol.13 (18), p.2889-2900

2014

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ABCB5-Targeted Chemoresistance Reversal Inhibits Merkel Cell Carcinoma Growth

Journal of investigative dermatology, 2016-04, Vol.136 (4), p.838-846

2016

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Sequential Binary Gene Ratio Tests Define a Novel Molecular Diagnostic Strategy for Malignant Pleural Mesothelioma

Clinical cancer research, 2013-05, Vol.19 (9), p.2493-2502

2013

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Inferring Protein-Protein Interactions in Viral Proteins by Co-Evolution of Conserved Side Chains

Genome Informatics, 2006, Vol.17(1), pp.23-35

2006

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Computational Methods for Functional Site Identification Suggest a Substrate Access Channel in Transaldolase

Genome Informatics, 2006, Vol.17(1), pp.13-22

2006

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Selecting Stable Molecular Targets for Treatment and Prevention of AIDS

Genome Informatics, 2005, Vol.16(1), pp.254-261

2005

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Abstract LB181: Infer cancer cell gene dependency in multiple myeloma using causal AI in-silico patient model

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (8_Supplement), p.LB181-LB181

2023

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1.11 Integrative Genomic Analysis Implicates PIK3CA and MYC in Chronic Lymphocytic Leukemia

Clinical lymphoma, myeloma and leukemia, 2011-10, Vol.11, p.S147-S148

2011

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High Throughput Sequencing of Extracellular RNA from Human Plasma

WebMeV: A Cloud Platform for Analyzing and Visualizing Cancer Genomic Data

BRCA1 and RNAi factors promote repair mediated by small RNAs and PALB2–RAD52

Global epigenetic regulation of microRNAs in multiple myeloma

Protective HLA Class I Alleles That Restrict Acute-Phase CD8+ T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodeficiency Virus Type 1

Structural and Functional Constraints Limit Options for Cytotoxic T-Lymphocyte Escape in the Immunodominant HLA-B27-Restricted Epitope in Human Immunodeficiency Virus Type 1 Capsid

Genetic Characterization of Human Immunodeficiency Virus Type 1 in Elite Controllers: Lack of Gross Genetic Defects or Common Amino Acid Changes

Transcriptional elongation requires DNA break-induced signalling

Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling

PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments

A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers

Compensatory Mutations Restore the Replication Defects Caused by Cytotoxic T Lymphocyte Escape Mutations in Hepatitis C Virus Polymerase

Transmission and Long-Term Stability of Compensated CD8 Escape Mutations

Kinase-independent function of E-type cyclins in liver cancer

RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes

HIF activation causes synthetic lethality between the VHL tumor suppressor and the EZH1 histone methyltransferase

Next-generation sequencing and microarray-based interrogation of microRNAs from formalin-fixed, paraffin-embedded tissue: Preliminary assessment of cross-platform concordance

The cyclin D1-CDK4 oncogenic interactome enables identification of potential novel oncogenes and clinical prognosis

ABCB5-Targeted Chemoresistance Reversal Inhibits Merkel Cell Carcinoma Growth

Sequential Binary Gene Ratio Tests Define a Novel Molecular Diagnostic Strategy for Malignant Pleural Mesothelioma

Inferring Protein-Protein Interactions in Viral Proteins by Co-Evolution of Conserved Side Chains

Computational Methods for Functional Site Identification Suggest a Substrate Access Channel in Transaldolase

Selecting Stable Molecular Targets for Treatment and Prevention of AIDS

Abstract LB181: Infer cancer cell gene dependency in multiple myeloma using causal AI in-silico patient model

1.11 Integrative Genomic Analysis Implicates PIK3CA and MYC in Chronic Lymphocytic Leukemia

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