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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Nature communications, 2019-08, Vol.10 (1), p.3586-13, Article 3586

2019

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Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Nature communications, 2022-06, Vol.13 (1), p.3766-3766, Article 3766

2022

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Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Nature communications, 2022-05, Vol.13 (1), p.2969-2969, Article 2969

2022

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Resin acids play key roles in shaping microbial communities during degradation of spruce bark

Nature communications, 2023-12, Vol.14 (1), p.8171-8171, Article 8171

2023

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Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica

Biotechnology reports (Amsterdam, Netherlands), 2020-09, Vol.27, p.e00521-e00521, Article e00521

2020

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Urea is a drop-in nitrogen source alternative to ammonium sulphate in Yarrowia lipolytica

iScience, 2022-12, Vol.25 (12), p.105703-105703, Article 105703

2022

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Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

iScience, 2021-11, Vol.24 (11), p.103294-103294, Article 103294

2021

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Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (51)

2021

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Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

iScience, 2020-09, Vol.23 (9), p.101525-101525, Article 101525

2020

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Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Nature communications, 2020-10, Vol.11 (1), p.5443-5443, Article 5443

2020

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Barriers and opportunities in bio-based production of hydrocarbons

Nature energy, 2018-11, Vol.3 (11), p.925-935

2018

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Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Proceedings of the National Academy of Sciences - PNAS, 2023-02, Vol.120 (6), p.e2217868120-e2217868120

2023

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Mapping the metabolism of five amino acids in bloodstream form Trypanosoma brucei using U-13C-labelled substrates and LC–MS

Bioscience reports, 2019-05, Vol.39 (5)

2019

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Generation and analysis of context-specific genome-scale metabolic models derived from-cell data

Proceedings of the National Academy of Sciences - PNAS, 2023-02, Vol.120 (6)

2023

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Biosynthesis of Hesperetin, Homoeriodictyol, and Homohesperetin in a Transcriptomics-Driven Engineered Strain of IStreptomyces albidoflavus/I

International journal of molecular sciences, 2024-04, Vol.25 (7)

2024

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Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

Molecular systems biology, 2017-08, Vol.13 (8)

2017

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Mapping the metabolism of five amino acids in bloodstream form Trypanosoma brucei using U- 13 C-labelled substrates and LC-MS

Bioscience reports, 2019-05, Vol.39 (5)

2019

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Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

mBio, 2017-07, Vol.8 (3)

2017

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Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in Trypanosoma brucei: e1003371

PLoS computational biology, 2013-12, Vol.9 (12)

2013

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Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in italic toggle="yes">Yarrowia lipolytica /italic

mBio, 2017-07, Vol.8 (3)

2017

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Modeling Lipid Metabolism in Yeast

Biogenesis of Fatty Acids, Lipids and Membranes, p.375-388

Kerkhoven, Eduard J.

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The Silicon Trypanosome

Advances in Microbial Physiology, 2014, Vol.64, p.115-143

2014

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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Resin acids play key roles in shaping microbial communities during degradation of spruce bark

Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica

Urea is a drop-in nitrogen source alternative to ammonium sulphate in Yarrowia lipolytica

Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Barriers and opportunities in bio-based production of hydrocarbons

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Mapping the metabolism of five amino acids in bloodstream form Trypanosoma brucei using U-13C-labelled substrates and LC–MS

Generation and analysis of context-specific genome-scale metabolic models derived from-cell data

Biosynthesis of Hesperetin, Homoeriodictyol, and Homohesperetin in a Transcriptomics-Driven Engineered Strain of IStreptomyces albidoflavus/I

Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

Mapping the metabolism of five amino acids in bloodstream form Trypanosoma brucei using U- 13 C-labelled substrates and LC-MS

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

Probing the Metabolic Network in Bloodstream-Form Trypanosoma brucei Using Untargeted Metabolomics with Stable Isotope Labelled Glucose: e1004689

Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in Trypanosoma brucei: e1003371

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in italic toggle="yes">Yarrowia lipolytica /italic

Modeling Lipid Metabolism in Yeast

The Silicon Trypanosome

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