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Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function

Journal of imaging, 2023-01, Vol.9 (2), p.25

2023

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Object‐Oriented Segmentation of Cell Nuclei in Fluorescence Microscopy Images

Cytometry. Part A, 2018-10, Vol.93 (10), p.1019-1028

2018

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Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

PLoS computational biology, 2021-11, Vol.17 (11), p.e1009171

2021

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The PI3K/AKT/mTOR interactive pathway

Molecular bioSystems, 2015-07, Vol.11 (7), p.1946-1954

2015

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Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment

Molecular cancer therapeutics, 2019-11, Vol.18 (11), p.2146-2157

2019

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Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

Briefings in bioinformatics, 2019-09, Vol.20 (5), p.1878-1912

2019

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ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

BMC bioinformatics, 2018-09, Vol.19 (1), p.334-334, Article 334

2018

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Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response

eLife, 2020-04, Vol.9

2020

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Iterative h‐minima‐based marker‐controlled watershed for cell nucleus segmentation

Cytometry. Part A, 2016-04, Vol.89 (4), p.338-349

2016

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EGF-SNX3-EGFR axis drives tumor progression and metastasis in triple-negative breast cancers

Oncogene, 2022-01, Vol.41 (2), p.220-232

2022

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PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Molecular and cellular biology, 2015-05, Vol.35 (10), p.1741-1753

2015

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Contrast Enhancement of Microscopy Images Using Image Phase Information

IEEE access, 2018-01, Vol.6, p.3839-3850

2018

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Intermittent Hypoxia-Induced Activation of Endothelial Cells Is Mediated via Sympathetic Activation-Dependent Catecholamine Release

Frontiers in physiology, 2021-07, Vol.12, p.701995-701995

2021

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HIF-1α induces glycolytic reprograming in tissue-resident alveolar macrophages to promote cell survival during acute lung injury

eLife, 2022-07, Vol.11

2022

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Design, synthesis, and biological evaluation of indole-based 1,4-disubstituted piperazines as cytotoxic agents

Turkish journal of chemistry, 2012-01

2012

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DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

Chemical science (Cambridge), 2020-03, Vol.11 (9), p.2531-2557

2020

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Abstract LB-A08: Differential alteration of IL-8 in response to Sorafenib and PI3K/Akt/mTOR inhibitors in liver cancer cells and in liver cancer stem cells

Molecular cancer therapeutics, 2018-01, Vol.17 (1_Supplement), p.LB-A08-LB-A08

2018

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iBioProVis: interactive visualization and analysis of compound bioactivity space

Bioinformatics, 2020-08, Vol.36 (14), p.4227-4230

2020

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Synthesis and cellular bioactivities of novel isoxazole derivatives incorporating an arylpiperazine moiety as anticancer agents

Journal of enzyme inhibition and medicinal chemistry, 2018-01, Vol.33 (1), p.1352-1361

2018

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iBioProVis: interactive visualization and analysis of compound bioactivity space

Bioinformatics, 2020-11, Vol.36 (17), p.4674-4674

2020

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Abstract 5235: In vitro validation of drug-target interactions revealed in silico by Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning (CROssBAR) in HCC

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.5235-5235

2020

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Abstract 3937: Differential alteration of IL-8 in liver cancer stem cell enrichment in response to PI3K/Akt/mTOR inhibitors and sorafenib

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.3937-3937

2018

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Human Hepatocellular Carcinoma Classification from H E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function

Journal of imaging, 2023-01, Vol.9 (2), p.25

2023

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DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc03414e

Chemical science (Cambridge), 2020-01, Vol.11 (9), p.2531-2557

2020

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Effects of small molecule inhibitors on liver cancer stem cells in comparison with Sorafenib

The Turkish journal of gastroenterology, 2019-05, Vol.30 (Supp1), p.7-7

2019

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Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function

Object‐Oriented Segmentation of Cell Nuclei in Fluorescence Microscopy Images

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

The PI3K/AKT/mTOR interactive pathway

Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response

Iterative h‐minima‐based marker‐controlled watershed for cell nucleus segmentation

EGF-SNX3-EGFR axis drives tumor progression and metastasis in triple-negative breast cancers

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Contrast Enhancement of Microscopy Images Using Image Phase Information

Intermittent Hypoxia-Induced Activation of Endothelial Cells Is Mediated via Sympathetic Activation-Dependent Catecholamine Release

HIF-1α induces glycolytic reprograming in tissue-resident alveolar macrophages to promote cell survival during acute lung injury

Design, synthesis, and biological evaluation of indole-based 1,4-disubstituted piperazines as cytotoxic agents

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

Abstract LB-A08: Differential alteration of IL-8 in response to Sorafenib and PI3K/Akt/mTOR inhibitors in liver cancer cells and in liver cancer stem cells

iBioProVis: interactive visualization and analysis of compound bioactivity space

Synthesis and cellular bioactivities of novel isoxazole derivatives incorporating an arylpiperazine moiety as anticancer agents

iBioProVis: interactive visualization and analysis of compound bioactivity space

Abstract 5235: In vitro validation of drug-target interactions revealed in silico by Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning (CROssBAR) in HCC

Abstract 3937: Differential alteration of IL-8 in liver cancer stem cell enrichment in response to PI3K/Akt/mTOR inhibitors and sorafenib

Human Hepatocellular Carcinoma Classification from H E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc03414e

Effects of small molecule inhibitors on liver cancer stem cells in comparison with Sorafenib

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