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Circular RNA identification based on multiple seed matching

Briefings in bioinformatics, 2018-09, Vol.19 (5), p.803-810

2018

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Deterministic transition of enterotypes shapes the infant gut microbiome at an early age

Genome Biology, 2021-08, Vol.22 (1), p.243-243, Article 243

2021

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Translocation of vaginal microbiota is involved in impairment and protection of uterine health

Nature communications, 2021-07, Vol.12 (1), p.4191-4191, Article 4191

2021

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Comprehensive identification of internal structure and alternative splicing events in circular RNAs

Nature communications, 2016-06, Vol.7 (1), p.12060-12060, Article 12060

2016

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Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8 +/- mouse model of ASD-like behavior

Nature communications, 2022-03, Vol.13 (1), p.1151-15, Article 1151

2022

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Phage-bacteria interaction network in human oral microbiome

Environmental microbiology, 2016-07, Vol.18 (7), p.2143-2158

2016

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Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing

Nature communications, 2022-06, Vol.13 (1), p.3242-3242, Article 3242

2022

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Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

Current biology, 2016-07, Vol.26 (14), p.1873-1879

2016

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Gut microbiota dysbiosis contributes to the development of hypertension

Microbiome, 2017-02, Vol.5 (1), p.14-14, Article 14

2017

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Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals

Cell reports (Cambridge), 2019-03, Vol.26 (12), p.3444-3460.e5

2019

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The meconium microbiota shares more features with the amniotic fluid microbiota than the maternal fecal and vaginal microbiota

Gut microbes, 2020-11, Vol.12 (1), p.1794266-1794266

2020

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Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

Nature communications, 2013, Vol.4 (1), p.2151-2151, Article 2151

2013

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BreakSeek: a breakpoint-based algorithm for full spectral range INDEL detection

Nucleic acids research, 2015-08, Vol.43 (14), p.6701

2015

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Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis

Frontiers in microbiology, 2021-09, Vol.12, p.749218-749218

2021

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Screening Linear and Circular RNA Transcripts from Stress Granules

Genomics, proteomics & bioinformatics, 2023-08, Vol.21 (4), p.886-893

2023

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The interplay of gut microbiota between donors and recipients determines the efficacy of fecal microbiota transplantation

Gut microbes, 2022-12, Vol.14 (1), p.2100197-2100197

2022

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The first metagenome of activated sludge from full-scale anaerobic/anoxic/oxic (A2O) nitrogen and phosphorus removal reactor using Illumina sequencing

Journal of environmental sciences (China), 2015-09, Vol.35, p.181-190

2015

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RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes

Nucleic acids research, 2016-06, Vol.44 (10), p.e99

2016

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Dysbiosis Signature of Fecal Microbiota in Colorectal Cancer Patients

Microbial ecology, 2013-08, Vol.66 (2), p.462-470

2013

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Microbial transmission, colonisation and succession: from pregnancy to infancy

Gut, 2023-04, Vol.72 (4), p.772

2023

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Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks

PloS one, 2011-10, Vol.6 (10), p.e25604

2011

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Exploring the landscape of symbiotic diversity and distribution in unicellular ciliated protists

Microbiome, 2024-05, Vol.12 (1), p.96-96, Article 96

2024

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Computational Strategies for Exploring Circular RNAs

Trends in genetics, 2018-05, Vol.34 (5), p.389-400

2018

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Author Correction: Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long

Nature biotechnology, 2021-07, Vol.39 (7), p.893-893

2021

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Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms

Nucleic acids research, 2013-01, Vol.41 (1), p.e3

2013

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Circular RNA identification based on multiple seed matching

Deterministic transition of enterotypes shapes the infant gut microbiome at an early age

Translocation of vaginal microbiota is involved in impairment and protection of uterine health

Comprehensive identification of internal structure and alternative splicing events in circular RNAs

Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8 +/- mouse model of ASD-like behavior

Phage-bacteria interaction network in human oral microbiome

Exploring the cellular landscape of circular RNAs using full-length single-cell RNA sequencing

Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

Gut microbiota dysbiosis contributes to the development of hypertension

Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals

The meconium microbiota shares more features with the amniotic fluid microbiota than the maternal fecal and vaginal microbiota

Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

BreakSeek: a breakpoint-based algorithm for full spectral range INDEL detection

Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis

Screening Linear and Circular RNA Transcripts from Stress Granules

The interplay of gut microbiota between donors and recipients determines the efficacy of fecal microbiota transplantation

The first metagenome of activated sludge from full-scale anaerobic/anoxic/oxic (A2O) nitrogen and phosphorus removal reactor using Illumina sequencing

RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes

Dysbiosis Signature of Fecal Microbiota in Colorectal Cancer Patients

Microbial transmission, colonisation and succession: from pregnancy to infancy

Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks

Exploring the landscape of symbiotic diversity and distribution in unicellular ciliated protists

Computational Strategies for Exploring Circular RNAs

Author Correction: Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long

Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms

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