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Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

Bioinformatics, 2011-12, Vol.27 (24), p.3423-3424

2011

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Role of LDB1 in the transition from chromatin looping to transcription activation

Genes & development, 2014-06, Vol.28 (12), p.1278-1290

2014

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Sex- and Tissue-Specific Functions of Drosophila Doublesex Transcription Factor Target Genes

Developmental cell, 2014-12, Vol.31 (6), p.761-773

2014

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Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages

Nature communications, 2022-07, Vol.13 (1), p.4257-18, Article 4257

2022

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Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

eLife, 2021-01, Vol.10

2021

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An epigenome atlas of neural progenitors within the embryonic mouse forebrain

Nature communications, 2022-07, Vol.13 (1), p.4196-4196, Article 4196

2022

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Cerebrospinal Fluid Protein Biomarker Discovery in CLN3

Journal of proteome research, 2023-07, Vol.22 (7), p.2493-2508

2023

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RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function

Genes & development, 2011-08, Vol.25 (16), p.1686-1701

2011

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Profiles of Wnt pathway gene expression during tooth morphogenesis

Frontiers in physiology, 2024-01, Vol.14, p.1316635-1316635

2024

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Loss of Ezh2 in the medial ganglionic eminence alters interneuron fate, cell morphology and gene expression profiles

Frontiers in cellular neuroscience, 2024-02, Vol.18, p.1334244-1334244

2024

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Mediation of Drosophila autosomal dosage effects and compensation by network interactions

Genome biology, 2012-01, Vol.13 (4), p.r28-r28

2012

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SMAD3 mutation in LDS3 causes bone fragility by impairing the TGF-β pathway and enhancing osteoclastogenesis

Bone Reports, 2022-12, Vol.17, p.101603-101603, Article 101603

2022

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Identification of cerebral spinal fluid protein biomarkers in Niemann-Pick disease, type C1

Biomarker research, 2023-01, Vol.11 (1), p.14-14, Article 14

2023

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Embryonic erythropoiesis and hemoglobin switching require transcriptional repressor ETO2 to modulate chromatin organization

Nucleic acids research, 2020-10, Vol.48 (18), p.10226-10240

2020

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The zinc-finger protein CLAMP promotes gypsy chromatin insulator function in Drosophila

Journal of cell science, 2019-03, Vol.132 (5)

2019

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Messenger RNA transport on lysosomal vesicles maintains axonal mitochondrial homeostasis and prevents axonal degeneration

Nature neuroscience, 2024-06

2024

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Correction: The zinc-finger protein CLAMP promotes gypsy chromatin insulator function in Drosophila (doi:10.1242/jcs.226092)

Journal of cell science, 2019-03, Vol.132 (6)

2019

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Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster

Scientific reports, 2018-10, Vol.8 (1), p.15685-10, Article 15685

2018

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Spatial and temporal patterns of salinity and temperature at an intertidal groundwater seep

Estuarine, coastal and shelf science, 2007-03, Vol.72 (1), p.283-298

2007

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Absence of TRIC-B from type XIV Osteogenesis Imperfecta osteoblasts alters cell adhesion and mitochondrial function – A multi-omics study

Matrix biology, 2023-08, Vol.121, p.127-148

2023

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Somatic SMAD3-activating mutations cause melorheostosis by up-regulating the TGF-β/SMAD pathway

The Journal of experimental medicine, 2020-05, Vol.217 (5)

2020

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CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus

Nucleic acids research, 2012-09, Vol.40 (16), p.7718-7727

2012

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Transcriptome of HPβCD-treated Niemann-Pick disease type C1 cells highlights GPNMB as a biomarker for therapeutics

Human molecular genetics, 2021-11, Vol.30 (24), p.2456-2468

2021

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The role of Niemann-Pick type C2 in zebrafish embryonic development

Development (Cambridge), 2021-04, Vol.148 (7), p.dev.194258

2021

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metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA

Nucleic acids research, 2014-08, Vol.42 (14), p.9158-9170

2014

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Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

Role of LDB1 in the transition from chromatin looping to transcription activation

Sex- and Tissue-Specific Functions of Drosophila Doublesex Transcription Factor Target Genes

Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

An epigenome atlas of neural progenitors within the embryonic mouse forebrain

Cerebrospinal Fluid Protein Biomarker Discovery in CLN3

RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function

Profiles of Wnt pathway gene expression during tooth morphogenesis

Loss of Ezh2 in the medial ganglionic eminence alters interneuron fate, cell morphology and gene expression profiles

Mediation of Drosophila autosomal dosage effects and compensation by network interactions

SMAD3 mutation in LDS3 causes bone fragility by impairing the TGF-β pathway and enhancing osteoclastogenesis

Identification of cerebral spinal fluid protein biomarkers in Niemann-Pick disease, type C1

Embryonic erythropoiesis and hemoglobin switching require transcriptional repressor ETO2 to modulate chromatin organization

The zinc-finger protein CLAMP promotes gypsy chromatin insulator function in Drosophila

Messenger RNA transport on lysosomal vesicles maintains axonal mitochondrial homeostasis and prevents axonal degeneration

Correction: The zinc-finger protein CLAMP promotes gypsy chromatin insulator function in Drosophila (doi:10.1242/jcs.226092)

Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster

Spatial and temporal patterns of salinity and temperature at an intertidal groundwater seep

Absence of TRIC-B from type XIV Osteogenesis Imperfecta osteoblasts alters cell adhesion and mitochondrial function – A multi-omics study

Somatic SMAD3-activating mutations cause melorheostosis by up-regulating the TGF-β/SMAD pathway

CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus

Transcriptome of HPβCD-treated Niemann-Pick disease type C1 cells highlights GPNMB as a biomarker for therapeutics

The role of Niemann-Pick type C2 in zebrafish embryonic development

metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA

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