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SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection

Briefings in bioinformatics, 2021-05, Vol.22 (3)

2021

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Focused ultrasound-mediated blood-brain barrier opening in Alzheimer's disease: long-term safety, imaging, and cognitive outcomes

Journal of neurosurgery, 2023-07, Vol.139 (1), p.275-283

2023

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Germline Analysis from Tumor-Germline Sequencing Dyads to Identify Clinically Actionable Secondary Findings

Clinical cancer research, 2016-08, Vol.22 (16), p.4087-4094

2016

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The feasibility of genetic dissection of endophenotypes

Psychophysiology, 2014-12, Vol.51 (12), p.1337-1338

Wilhelmsen, Kirk C.

2014

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A greedy regression algorithm with coarse weights offers novel advantages

Scientific reports, 2022-03, Vol.12 (1), p.5440-14, Article 5440

2022

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An informatics approach to analyzing the incidentalome

Genetics in medicine, 2013-01, Vol.15 (1), p.36-44

2013

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Projected t-SNE for batch correction

Bioinformatics, 2020-06, Vol.36 (11), p.3522-3527

2020

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Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing

BMC bioinformatics, 2021-07, Vol.22 (1), p.1-374, Article 374

2021

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Effects of genetic risk for alcohol dependence and onset of regular drinking on the progression to alcohol dependence: A polygenic risk score approach

Drug and alcohol dependence, 2022-01, Vol.230, p.109117-109117, Article 109117

2022

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Genome‐wide meta‐analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence

American journal of medical genetics. Part B, Neuropsychiatric genetics, 2017-07, Vol.174 (5), p.557-567

2017

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A semiquantitative metric for evaluating clinical actionability of incidental or secondary findings from genome-scale sequencing

Genetics in medicine, 2016-05, Vol.18 (5), p.467-475

2016

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Variant calling in low-coverage whole genome sequencing of a Native American population sample

BMC genomics, 2014-01, Vol.15 (1), p.85-85, Article 85

2014

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Genetic loci for alcohol-related life events and substance-induced affective symptoms: indexing the "dark side" of addiction

Translational psychiatry, 2019-02, Vol.9 (1), p.71, Article 71

2019

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Whole genome sequence study of cannabis dependence in two independent cohorts

Addiction biology, 2018-01, Vol.23 (1), p.461-473

2018

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Author Correction: scRNA-seq in medulloblastoma shows cellular heterogeneity and lineage expansion support resistance to SHH inhibitor therapy

Nature communications, 2022-05, Vol.13 (1), p.3048-3048, Article 3048

2022

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ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data

BMC bioinformatics, 2012-09, Vol.13 (1), p.221-221, Article 221

2012

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Surface-based correlates of cognition along the Alzheimer's continuum in a memory clinic population

Frontiers in neurology, 2023-09, Vol.14, p.1214083-1214083

2023

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Integration of expression quantitative trait loci and pleiotropy identifies a novel psoriasis susceptibility gene, PTPN1

The journal of gene medicine, 2017-01, Vol.19 (1-2), p.n/a

2017

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Whole Exome Sequencing Identifies Truncating Variants in Nuclear Envelope Genes in Patients With Cardiovascular Disease

Circulation. Cardiovascular genetics, 2017-06, Vol.10 (3)

2017

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The phenotype of multiple congenital anomalies-hypotonia-seizures syndrome 1: Report and review

American journal of medical genetics. Part A, 2015-09, Vol.167A (9), p.2176-2181

2015

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A Novel Tobacco Use Phenotype Suggests the 15q25 and 19q13 Loci May be Differentially Associated With Cigarettes per Day and Tobacco-Related Problems

Nicotine & tobacco research, 2017-04, Vol.19 (4), p.426-434

2017

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DNA methylation in brain tissue and Alzheimer’s disease

Alzheimer's & dementia, 2015-07, Vol.11 (7), p.P485-P485

2015

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Association of Predicted Expression and Multimodel Association Analysis of Substance Abuse Traits

Complex psychiatry, 2022-09, Vol.8 (1-2), p.35-46

2022

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More Similar than Different: Memory, Executive Functions, Cortical Thickness, and Glucose Metabolism in Biomarker-Positive Alzheimer’s Disease and Behavioral Variant Frontotemporal Dementia

JAD reports, 2024-01, Vol.8 (1), p.57-73

2024

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SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection

Focused ultrasound-mediated blood-brain barrier opening in Alzheimer's disease: long-term safety, imaging, and cognitive outcomes

Germline Analysis from Tumor-Germline Sequencing Dyads to Identify Clinically Actionable Secondary Findings

The feasibility of genetic dissection of endophenotypes

A greedy regression algorithm with coarse weights offers novel advantages

An informatics approach to analyzing the incidentalome

Projected t-SNE for batch correction

Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing

Effects of genetic risk for alcohol dependence and onset of regular drinking on the progression to alcohol dependence: A polygenic risk score approach

Genome‐wide meta‐analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence

A semiquantitative metric for evaluating clinical actionability of incidental or secondary findings from genome-scale sequencing

Variant calling in low-coverage whole genome sequencing of a Native American population sample

Genetic loci for alcohol-related life events and substance-induced affective symptoms: indexing the "dark side" of addiction

Whole genome sequence study of cannabis dependence in two independent cohorts

Author Correction: scRNA-seq in medulloblastoma shows cellular heterogeneity and lineage expansion support resistance to SHH inhibitor therapy

ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data

Surface-based correlates of cognition along the Alzheimer's continuum in a memory clinic population

Integration of expression quantitative trait loci and pleiotropy identifies a novel psoriasis susceptibility gene, PTPN1

Whole Exome Sequencing Identifies Truncating Variants in Nuclear Envelope Genes in Patients With Cardiovascular Disease

Common susceptibility variants are shared between schizophrenia and psoriasis in the Han Chinese population

The phenotype of multiple congenital anomalies-hypotonia-seizures syndrome 1: Report and review

A Novel Tobacco Use Phenotype Suggests the 15q25 and 19q13 Loci May be Differentially Associated With Cigarettes per Day and Tobacco-Related Problems

DNA methylation in brain tissue and Alzheimer’s disease

Association of Predicted Expression and Multimodel Association Analysis of Substance Abuse Traits

More Similar than Different: Memory, Executive Functions, Cortical Thickness, and Glucose Metabolism in Biomarker-Positive Alzheimer’s Disease and Behavioral Variant Frontotemporal Dementia

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