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Remote homology search with hidden Potts models

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008085-e1008085

2020

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Calibrating dimension reduction hyperparameters in the presence of noise

PLoS computational biology, 2024-09, Vol.20 (9), p.e1012427

2024

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FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

PLoS computational biology, 2024-01, Vol.20 (1), p.e1011786-e1011786

2024

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Identifying the combinatorial control of signal-dependent transcription factors

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009095-e1009095

2021

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A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011880-e1011880

2024

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Inference of annealed protein fitness landscapes with AnnealDCA

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011812-e1011812

2024

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Emergence of cooperative bistability and robustness of gene regulatory networks

PLoS computational biology, 2020-06, Vol.16 (6), p.e1007969-e1007969

2020

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Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion

PLoS computational biology, 2021-04, Vol.17 (4), p.e1008218-e1008218

2021

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Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies

PLoS computational biology, 2023-10, Vol.19 (10), p.e1010608-e1010608

2023

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Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008379

2021

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Mesoscale, long-time mixing of chromosomes and its connection to polymer dynamics

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011142-e1011142

2023

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Internet addiction and sleep quality among adolescents in a peri-urban setting in Nepal: A cross-sectional school-based survey

PloS one, 2021-02, Vol.16 (2), p.e0246940-e0246940

2021

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DID INDIA EVER HAVE A RIGHT TO THE CITY MOVEMENT? Rethinking Housing Justice in Violent Times

International journal of urban and regional research, 2024-07, Vol.48 (4), p.650-664

Pati, Sushmita

2024

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Realization of High Thermoelectric Figure of Merit in Solution Synthesized 2D SnSe Nanoplates via Ge Alloying

Journal of the American Chemical Society, 2019-04, Vol.141 (15), p.6141-6145

2019

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CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009670-e1009670

2021

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The Impact of Biases on Financial Decisions and the Role of Financial Literacy Combating them: A Review

Asian Journal of Research in Banking and Finance, 2018, Vol.8 (5), p.96

Sushmita

2018

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Recent advances in the synthesis of carbazoles from indoles

Organic & biomolecular chemistry, 2019-09, Vol.17 (36), p.833-8342

2019

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Learning and interpreting the gene regulatory grammar in a deep learning framework

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008334-e1008334

2020

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Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets

PLoS computational biology, 2019-11, Vol.15 (11), p.e1007337-e1007337

2019

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Differential Expression Profile of NLRs and AIM2 in Glioma and Implications for NLRP12 in Glioblastoma

Scientific reports, 2019-06, Vol.9 (1), p.8480-8480, Article 8480

2019

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Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

PLoS computational biology, 2020-04, Vol.16 (4), p.e1007197

2020

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Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008819-e1008819

2021

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Sustainable packaging for supply chain management in the circular economy: A review

Journal of cleaner production, 2019-11, Vol.237, p.117582, Article 117582

2019

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Learning clinical networks from medical records based on information estimates in mixed-type data

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007866-e1007866

2020

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Full-length ribosome density prediction by a multi-input and multi-output model

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008842-e1008842

2021

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Remote homology search with hidden Potts models

Calibrating dimension reduction hyperparameters in the presence of noise

FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

Identifying the combinatorial control of signal-dependent transcription factors

A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization

Inference of annealed protein fitness landscapes with AnnealDCA

Emergence of cooperative bistability and robustness of gene regulatory networks

Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion

Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies

Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples

Mesoscale, long-time mixing of chromosomes and its connection to polymer dynamics

Internet addiction and sleep quality among adolescents in a peri-urban setting in Nepal: A cross-sectional school-based survey

DID INDIA EVER HAVE A RIGHT TO THE CITY MOVEMENT? Rethinking Housing Justice in Violent Times

Realization of High Thermoelectric Figure of Merit in Solution Synthesized 2D SnSe Nanoplates via Ge Alloying

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

The Impact of Biases on Financial Decisions and the Role of Financial Literacy Combating them: A Review

Recent advances in the synthesis of carbazoles from indoles

Learning and interpreting the gene regulatory grammar in a deep learning framework

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets

Differential Expression Profile of NLRs and AIM2 in Glioma and Implications for NLRP12 in Glioblastoma

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer

Sustainable packaging for supply chain management in the circular economy: A review

Learning clinical networks from medical records based on information estimates in mixed-type data

Full-length ribosome density prediction by a multi-input and multi-output model

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