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Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Nature methods, 2015-03, Vol.12 (3), p.211

2015

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Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Nature communications, 2017-10, Vol.8 (1), p.1221-14, Article 1221

2017

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Prognostic value of PAM50 and risk of recurrence score in patients with early-stage breast cancer with long-term follow-up

Breast cancer research : BCR, 2017-11, Vol.19 (1), p.120-120, Article 120

2017

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Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers

Nucleic acids research, 2022-11, Vol.50 (21), p.12131

2022

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MicroRNA in combination with HER2-targeting drugs reduces breast cancer cell viability in vitro

Scientific reports, 2021-05, Vol.11 (1), p.10893-10893, Article 10893

2021

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miRNA551b-3p Activates an Oncostatin Signaling Module for the Progression of Triple-Negative Breast Cancer

Cell reports (Cambridge), 2019-12, Vol.29 (13), p.4389-4406.e10

2019

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Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing

Genome Biology, 2016-12, Vol.17 (1), p.250-250, Article 250

2016

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Serum concentrations of active tamoxifen metabolites predict long-term survival in adjuvantly treated breast cancer patients

Breast cancer research : BCR, 2017-11, Vol.19 (1), p.125-125, Article 125

2017

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miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer

Molecular oncology, 2019-10, Vol.13 (10), p.2278-2296

2019

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miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008608-e1008608

2021

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MRI Assessment of Changes in Tumor Vascularization during Neoadjuvant Anti-Angiogenic Treatment in Locally Advanced Breast Cancer Patients

Cancers, 2023-09, Vol.15 (18), p.4662

2023

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Basal‐like breast cancer engages tumor‐supportive macrophages via secreted factors induced by extracellular S100A4

Molecular oncology, 2018-09, Vol.12 (9), p.1540-1558

2018

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Quantification of Tumor Hypoxia through Unsupervised Modelling of Consumption and Supply Hypoxia MR Imaging in Breast Cancer

Cancers, 2022-03, Vol.14 (5), p.1326

2022

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The Antigenicity of the Tumor Cell — Context Matters

The New England journal of medicine, 2017-02, Vol.376 (5), p.491-493

2017

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Complex molecular profile of DNA repair genes in epithelial ovarian carcinoma patients with different sensitivity to platinum-based therapy

Frontiers in oncology, 2022-12, Vol.12, p.1016958-1016958

2022

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Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer

BMC bioinformatics, 2011-05, Vol.12 (1), p.197-197, Article 197

2011

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Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Nature communications, 2019-01, Vol.10 (1), p.525-525, Article 525

2019

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Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Nature communications, 2018-12, Vol.9 (1), p.5397-1, Article 5397

2018

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Correction to: A systematic comparison of copy number alterations in four types of female cancer

BMC cancer, 2018-01, Vol.18 (1), p.80-80, Article 80

2018

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Principles and methods of integrative genomic analyses in cancer

Nature reviews. Cancer, 2014-05, Vol.14 (5), p.299

2014

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Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations

Bioinformatics, 2020-02, Vol.36 (4), p.994-999

2020

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Heterogeneous DNA Methylation Patterns in the GSTP1 Promoter Lead to Discordant Results between Assay Technologies and Impede Its Implementation as Epigenetic Biomarkers in Breast Cancer

Genes, 2015-09, Vol.6 (3), p.878-900

2015

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DNA methylation at enhancers identifies distinct breast cancer lineages

Nature communications, 2017-11, Vol.8 (1), p.1379-14, Article 1379

2017

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Next-generation sequencing of disseminated tumor cells

Frontiers in oncology, 2013-01, Vol.3, p.320-320

2013

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Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Prognostic value of PAM50 and risk of recurrence score in patients with early-stage breast cancer with long-term follow-up

Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers

MicroRNA in combination with HER2-targeting drugs reduces breast cancer cell viability in vitro

miRNA551b-3p Activates an Oncostatin Signaling Module for the Progression of Triple-Negative Breast Cancer

Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing

Serum concentrations of active tamoxifen metabolites predict long-term survival in adjuvantly treated breast cancer patients

miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer

miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer

MRI Assessment of Changes in Tumor Vascularization during Neoadjuvant Anti-Angiogenic Treatment in Locally Advanced Breast Cancer Patients

Basal‐like breast cancer engages tumor‐supportive macrophages via secreted factors induced by extracellular S100A4

Quantification of Tumor Hypoxia through Unsupervised Modelling of Consumption and Supply Hypoxia MR Imaging in Breast Cancer

The Antigenicity of the Tumor Cell — Context Matters

Complex molecular profile of DNA repair genes in epithelial ovarian carcinoma patients with different sensitivity to platinum-based therapy

Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer

Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Correction to: A systematic comparison of copy number alterations in four types of female cancer

Principles and methods of integrative genomic analyses in cancer

Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations

Heterogeneous DNA Methylation Patterns in the GSTP1 Promoter Lead to Discordant Results between Assay Technologies and Impede Its Implementation as Epigenetic Biomarkers in Breast Cancer

DNA methylation at enhancers identifies distinct breast cancer lineages

Next-generation sequencing of disseminated tumor cells

Correction: miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors

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