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Contemporaneous radiations of fungi and plants linked to symbiosis

Nature communications, 2018-12, Vol.9 (1), p.5451-11, Article 5451

2018

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AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

Bioinformatics, 2008-02, Vol.24 (4), p.581-583

2008

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BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Systematic biology, 2012-01, Vol.61 (1), p.170-173

2012

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Estimation of speciation times under the multispecies coalescent

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5182-5190

2022

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Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family

Zoological journal of the Linnean Society, 2018-01, Vol.182 (1), p.50-75

2018

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Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics

Journal of mammalian evolution, 1997-06, Vol.4 (2), p.77-86

1997

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Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (29), p.8049-8056

2016

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Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

Systematic biology, 2001-08, Vol.50 (4), p.525-539

2001

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Taxon sampling revisited

Nature (London), 1999-03, Vol.398 (6725), p.299-300

1999

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Inference of Phylogenetic Networks From Sequence Data Using Composite Likelihood

Systematic biology, 2024-10

2024

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Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

Genome research, 2011-06, Vol.21 (6), p.850-862

2011

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Hobgoblin of phylogenetics?

Nature (London), 1994-06, Vol.369 (6479), p.363-364

1994

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Partitioning and Combining Data in Phylogenetic Analysis

Systematic biology, 1993-09, Vol.42 (3), p.384-397

1993

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Coelacanth's relationships

Nature (London), 1991-09, Vol.353 (6341), p.217-218

1991

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Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated?

Systematic biology, 2001-09, Vol.50 (5), p.722

2001

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Searching for Phylogenetic Trees under the Frequency Parsimony Criterion: An Approximation Using Generalized Parsimony

Systematic biology, 1997-03, Vol.46 (1), p.211-215

1997

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Reconstructing ancestral character states under Wagner parsimony

Mathematical biosciences, 1987-12, Vol.87 (2), p.199-229

1987

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Geographic Origins of Human Mitochondrial DNA: Phylogenetic Evidence from Control Region Sequences

Systematic biology, 1992-03, Vol.41 (1), p.111-124

1992

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The Topology-Dependent Permutation Test for Monophyly Does Not Test for Monophyly

Systematic biology, 1996-12, Vol.45 (4), p.575-579

1996

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Is Character Weighting a Panacea for the Problem of Data Heterogeneity in Phylogenetic Analysis?

Systematic biology, 1994-06, Vol.43 (2), p.288-291

1994

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Nexus: An Extensible File Format for Systematic Information

Systematic biology, 1997-12, Vol.46 (4), p.590-621

1997

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Forum-Uneconomical Diagnosis of Cladograms: Comments on Wheeler and Nixon's Method for Sankoff Optimization

Cladistics, 1997-03, Vol.13 (1-2), p.153-159

1997

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Inferring Evolutionary Trees from Gene Frequency Data Under the Principal of Maximum Parsimony

Systematic zoology, 1987-09, Vol.36 (3), p.293

1987

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Morphological correlates of ecological specialization in darters

Environmental biology of fishes, 1984-01, Vol.11 (2), p.139-159

1984

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Numerical Taxonomy. Proceedings of the NATO Advanced Study Institute Held at Bad Windsheim, Germany, July 4-16, 1982. Joseph Felsenstein

The Quarterly review of biology, 1985-09, Vol.60 (3), p.346-347

Swofford, David L.

1985

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Contemporaneous radiations of fungi and plants linked to symbiosis

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Estimation of speciation times under the multispecies coalescent

Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family

Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics

Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past

Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods

Taxon sampling revisited

Inference of Phylogenetic Networks From Sequence Data Using Composite Likelihood

Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

Hobgoblin of phylogenetics?

Partitioning and Combining Data in Phylogenetic Analysis

Coelacanth's relationships

Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated?

Searching for Phylogenetic Trees under the Frequency Parsimony Criterion: An Approximation Using Generalized Parsimony

Reconstructing ancestral character states under Wagner parsimony

Geographic Origins of Human Mitochondrial DNA: Phylogenetic Evidence from Control Region Sequences

The Topology-Dependent Permutation Test for Monophyly Does Not Test for Monophyly

Is Character Weighting a Panacea for the Problem of Data Heterogeneity in Phylogenetic Analysis?

Nexus: An Extensible File Format for Systematic Information

Forum-Uneconomical Diagnosis of Cladograms: Comments on Wheeler and Nixon's Method for Sankoff Optimization

Inferring Evolutionary Trees from Gene Frequency Data Under the Principal of Maximum Parsimony

Morphological correlates of ecological specialization in darters

Numerical Taxonomy. Proceedings of the NATO Advanced Study Institute Held at Bad Windsheim, Germany, July 4-16, 1982. Joseph Felsenstein

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