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Advancing functional and translational microbiome research using meta-omics approaches

Microbiome, 2019-12, Vol.7 (1), p.154-12, Article 154

2019

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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

Nature communications, 2018-07, Vol.9 (1), p.2873-14, Article 2873

2018

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An in vitro model maintaining taxon-specific functional activities of the gut microbiome

Nature communications, 2019-09, Vol.10 (1), p.4146-11, Article 4146

2019

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RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

Microbiome, 2020-03, Vol.8 (1), p.33-33, Article 33

2020

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MetaLab: an automated pipeline for metaproteomic data analysis

Microbiome, 2017-12, Vol.5 (1), p.157-157, Article 157

2017

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All-natural 2D nanofluidics as highly-efficient osmotic energy generators

Nature communications, 2024-04, Vol.15 (1), p.3649-3649, Article 3649

2024

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Fabrication of Vertical-Standing Co-MOF Nanoarrays with 2D Parallelogram-like Morphology for Aqueous Asymmetric Electrochemical Capacitors

Molecules (Basel, Switzerland), 2021-09, Vol.26 (17), p.5394

2021

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Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Gut microbes, 2022-12, Vol.14 (1), p.2035658-2035658

2022

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Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Nature communications, 2023-06, Vol.14 (1), p.3428-14, Article 3428

2023

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Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes

Gut microbes, 2020-09, Vol.11 (5), p.1348-1361

2020

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Molecular characterization of hybrid virulence plasmids in ST11-KL64 KPC-2-producing multidrug-resistant hypervirulent Klebsiella pneumoniae from China

Frontiers in microbiology, 2024-03, Vol.15, p.1353849-1353849

2024

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Network Pharmacology-Based Strategy Integrated with Molecular Docking and In Vitro Experimental Validation to Explore the Underlying Mechanism of Fangji Huangqi Decoction in Treating Rheumatoid Arthritis

ACS omega, 2024-07, Vol.9 (29), p.31878-31889

2024

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Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment

Microbiome, 2023-04, Vol.11 (1), p.88-88, Article 88

2023

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Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface

Molecular & cellular proteomics, 2020-09, Vol.19 (9), p.1409-1417

2020

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Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome

Microbiology spectrum, 2022-06, Vol.10 (4), p.e0041222-e0041222

2022

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A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches

Computational and structural biotechnology journal, 2020-01, Vol.18, p.3833-3842

2020

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iMetaLab Suite: A one‐stop toolset for metaproteomics

iMeta, 2022-06, Vol.1 (2), p.e25-n/a

2022

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Robust stability mechanism of an artificial ecosystem based on biological mutations and synergies driven by ecological information

Ecological modelling, 2016, Vol.319 (10), p.208-217

2016

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MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

mSystems, 2022-08, Vol.7 (4), p.e0038122-e0038122

2022

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Mathematical modeling, design and optimization of conceptual configuration of soil-like substrate bioreactor based on system dynamics and digital simulation

Ecological engineering, 2013-02, Vol.51, p.45-58

2013

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Characteristics of the soil-like substrates produced with a novel technique combining aerobic fermentation and earthworm treatment

Advances in space research, 2012-12, Vol.50 (11), p.1495-1500

2012

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The influence of bioregenerative life‐support system dietary structure and lifestyle on the gut microbiota: a 105‐day ground‐based space simulation in Lunar Palace 1

Environmental microbiology, 2018-10, Vol.20 (10), p.3643-3656

2018

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Design and control of rotating soil-like substrate plant-growing facility based on plant water requirement and computational fluid dynamics simulation

Ecological engineering, 2014-03, Vol.64, p.269-275

2014

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Hollow-tubular porous carbon derived from cotton with high productivity for enhanced performance supercapacitor

Journal of power sources, 2019-10, Vol.438, p.226936, Article 226936

2019

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Nitrogen-doped hierarchically ellipsoidal porous carbon derived from Al-based metal-organic framework with enhanced specific capacitance and rate capability for high performance supercapacitors

Journal of power sources, 2019-08, Vol.432, p.102-111

2019

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Advancing functional and translational microbiome research using meta-omics approaches

Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

An in vitro model maintaining taxon-specific functional activities of the gut microbiome

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

MetaLab: an automated pipeline for metaproteomic data analysis

All-natural 2D nanofluidics as highly-efficient osmotic energy generators

Fabrication of Vertical-Standing Co-MOF Nanoarrays with 2D Parallelogram-like Morphology for Aqueous Asymmetric Electrochemical Capacitors

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes

Molecular characterization of hybrid virulence plasmids in ST11-KL64 KPC-2-producing multidrug-resistant hypervirulent Klebsiella pneumoniae from China

Network Pharmacology-Based Strategy Integrated with Molecular Docking and In Vitro Experimental Validation to Explore the Underlying Mechanism of Fangji Huangqi Decoction in Treating Rheumatoid Arthritis

Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment

Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface

Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome

A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches

iMetaLab Suite: A one‐stop toolset for metaproteomics

Robust stability mechanism of an artificial ecosystem based on biological mutations and synergies driven by ecological information

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

Mathematical modeling, design and optimization of conceptual configuration of soil-like substrate bioreactor based on system dynamics and digital simulation

Characteristics of the soil-like substrates produced with a novel technique combining aerobic fermentation and earthworm treatment

The influence of bioregenerative life‐support system dietary structure and lifestyle on the gut microbiota: a 105‐day ground‐based space simulation in Lunar Palace 1

Design and control of rotating soil-like substrate plant-growing facility based on plant water requirement and computational fluid dynamics simulation

Hollow-tubular porous carbon derived from cotton with high productivity for enhanced performance supercapacitor

Nitrogen-doped hierarchically ellipsoidal porous carbon derived from Al-based metal-organic framework with enhanced specific capacitance and rate capability for high performance supercapacitors

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