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Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker

Molecular biology and evolution, 2017-11, Vol.34 (11), p.2762-2772

2017

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Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

Nature communications, 2021-01, Vol.12 (1), p.354-15, Article 354

2021

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The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

BMC evolutionary biology, 2009-03, Vol.9, p.54

2009

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Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals

PLoS genetics, 2020-04, Vol.16 (4), p.e1008668-e1008668

2020

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Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds

Molecular biology and evolution, 2019-03, Vol.36 (3), p.458-471

2019

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Incomplete lineage sorting explains the low performance of DNA barcoding in a radiation of four species of Western European grasshoppers (Orthoptera: Acrididae: Chorthippus)

Biological journal of the Linnean Society, 2024-01, Vol.141 (1), p.33-50

Nabholz, Benoit

2024

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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox

eLife, 2021-02, Vol.10

2021

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Bio++: efficient extensible libraries and tools for computational molecular evolution

Molecular biology and evolution, 2013-08, Vol.30 (8), p.1745-1750

2013

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Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

PLoS genetics, 2013-04, Vol.9 (4), p.e1003457-e1003457

2013

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Response to Kratochvíl and Rovatsos

Current biology, 2022-01, Vol.32 (1), p.R30-R31

2022

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Obtaining mtDNA genomes from next-generation transcriptome sequencing: A case study on the basal Passerida (Aves: Passeriformes) phylogeny

Molecular phylogenetics and evolution, 2010-10, Vol.57 (1), p.466-470

2010

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Evolutionary forces affecting synonymous variations in plant genomes

PLoS genetics, 2017-05, Vol.13 (5), p.e1006799-e1006799

2017

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Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes

Molecular biology and evolution, 2016-06, Vol.33 (6), p.1517-1527

2016

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Significant selective constraint at 4-fold degenerate sites in the avian genome and its consequence for detection of positive selection

Genome biology and evolution, 2011-01, Vol.3, p.1381-1389

2011

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Strong Variations of Mitochondrial Mutation Rate across Mammals-the Longevity Hypothesis

Molecular biology and evolution, 2008-01, Vol.25 (1), p.120-130

2008

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Avian Genomes Revisited: Hidden Genes Uncovered and the Rates versus Traits Paradox in Birds

Molecular biology and evolution, 2017-12, Vol.34 (12), p.3123-3131

2017

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Demographic responses of oceanic island birds to local and regional ecological disruptions revealed by whole-genome sequencing

Molecular ecology, 2023-12

2023

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Hidden in plain sight: unveiling the distributions of green‐winged grasshoppers (Aiolopus spp.) with citizen‐science data

Journal of zoology (1987), 2023-08, Vol.320 (4), p.301-307

2023

Volltextzugriff (PDF)

Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds

Genome biology and evolution, 2013-01, Vol.5 (7), p.1273-1290

2013

Volltextzugriff (PDF)

Whole Genome Shotgun Phylogenomics Resolves the Pattern and Timing of Swallowtail Butterfly Evolution

Systematic biology, 2020-01, Vol.69 (1), p.38

2020

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Island songbirds as windows into evolution in small populations

Current biology, 2021-03, Vol.31 (6), p.1303-1310.e4

2021

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High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes

Molecular biology and evolution, 2013-02, Vol.30 (2), p.272-284

2013

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Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies

Genome biology and evolution, 2016-10, Vol.8 (10), p.3108-3119

2016

Volltextzugriff (PDF)

Dynamic Evolution of Base Composition: Causes and Consequences in Avian Phylogenomics

Molecular biology and evolution, 2011-08, Vol.28 (8), p.2197-2210

2011

Volltextzugriff (PDF)

Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA

Genome biology and evolution, 2018-02, Vol.10 (2), p.616-622

2018

Volltextzugriff (PDF)

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Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker

Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals

Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds

Incomplete lineage sorting explains the low performance of DNA barcoding in a radiation of four species of Western European grasshoppers (Orthoptera: Acrididae: Chorthippus)

High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox

Bio++: efficient extensible libraries and tools for computational molecular evolution

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

Response to Kratochvíl and Rovatsos

Obtaining mtDNA genomes from next-generation transcriptome sequencing: A case study on the basal Passerida (Aves: Passeriformes) phylogeny

Evolutionary forces affecting synonymous variations in plant genomes

Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes

Significant selective constraint at 4-fold degenerate sites in the avian genome and its consequence for detection of positive selection

Strong Variations of Mitochondrial Mutation Rate across Mammals-the Longevity Hypothesis

Avian Genomes Revisited: Hidden Genes Uncovered and the Rates versus Traits Paradox in Birds

Demographic responses of oceanic island birds to local and regional ecological disruptions revealed by whole-genome sequencing

Hidden in plain sight: unveiling the distributions of green‐winged grasshoppers (Aiolopus spp.) with citizen‐science data

Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds

Whole Genome Shotgun Phylogenomics Resolves the Pattern and Timing of Swallowtail Butterfly Evolution

Island songbirds as windows into evolution in small populations

High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes

Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies

Dynamic Evolution of Base Composition: Causes and Consequences in Avian Phylogenomics

Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA

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