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Predicting Pharmacodynamic Drug-Drug Interactions through Signaling Propagation Interference on Protein-Protein Interaction Networks

PloS one, 2015-10, Vol.10 (10), p.e0140816-e0140816

2015

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Optimized hydrophobic interactions and hydrogen bonding at the target-ligand interface leads the pathways of drug-designing

PloS one, 2010-08, Vol.5 (8), p.e12029

2010

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Predicting protein-protein interactions from primary protein sequences using a novel multi-scale local feature representation scheme and the random forest

PloS one, 2015-05, Vol.10 (5), p.e0125811-e0125811

2015

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Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database

PloS one, 2012-11, Vol.7 (11), p.e46524

2012

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t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks

PloS one, 2013-04, Vol.8 (4), p.e58368-e58368

2013

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HIPPIE: Integrating protein interaction networks with experiment based quality scores

PloS one, 2012-02, Vol.7 (2), p.e31826-e31826

2012

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Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes

PloS one, 2015-06, Vol.10 (6), p.e0131418-e0131418

2015

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Detection of Wolbachia in the tick Ixodes ricinus is due to the presence of the hymenoptera endoparasitoid Ixodiphagus hookeri

PloS one, 2012-01, Vol.7 (1), p.e30692-e30692

2012

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Force transduction and lipid binding in MscL: a continuum-molecular approach

PloS one, 2014-12, Vol.9 (12), p.e113947

2014

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Spatial ecology of bacteria at the microscale in soil

PloS one, 2014-01, Vol.9 (1), p.e87217-e87217

2014

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Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks

PloS one, 2015-06, Vol.10 (6), p.e0130743-e0130743

2015

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An interaction network predicted from public data as a discovery tool: application to the Hsp90 molecular chaperone machine

PloS one, 2011-10, Vol.6 (10), p.e26044-e26044

2011

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Predictions of hot spot residues at protein-protein interfaces using support vector machines

PloS one, 2011-02, Vol.6 (2), p.e16774-e16774

2011

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A new method for the discovery of essential proteins

PloS one, 2013-03, Vol.8 (3), p.e58763-e58763

2013

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Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties

PloS one, 2011-01, Vol.6 (1), p.e14556-e14556

2011

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Going the distance for protein function prediction: a new distance metric for protein interaction networks

PloS one, 2013-10, Vol.8 (10), p.e76339-e76339

2013

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DockQ: A Quality Measure for Protein-Protein Docking Models

PloS one, 2016-08, Vol.11 (8), p.e0161879-e0161879

2016

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Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network

PloS one, 2012-04, Vol.7 (4), p.e33393-e33393

2012

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In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences

PloS one, 2013-06, Vol.8 (6), p.e67008-e67008

2013

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Predicting protein phenotypes based on protein-protein interaction network

PloS one, 2011-03, Vol.6 (3), p.e17668-e17668

2011

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Predicting Anatomical Therapeutic Chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities

PloS one, 2012-04, Vol.7 (4), p.e35254

2012

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DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network

PloS one, 2017-11, Vol.12 (11), p.e0187091-e0187091

2017

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PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology

PloS one, 2017-10, Vol.12 (10), p.e0186039-e0186039

2017

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Bagging statistical network inference from large-scale gene expression data

PloS one, 2012-03, Vol.7 (3), p.e33624-e33624

2012

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Human activity helps prey win the predator-prey space race

PloS one, 2011-03, Vol.6 (3), p.e17050-e17050

2011

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Predicting Pharmacodynamic Drug-Drug Interactions through Signaling Propagation Interference on Protein-Protein Interaction Networks

Optimized hydrophobic interactions and hydrogen bonding at the target-ligand interface leads the pathways of drug-designing

Predicting protein-protein interactions from primary protein sequences using a novel multi-scale local feature representation scheme and the random forest

Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database

t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks

HIPPIE: Integrating protein interaction networks with experiment based quality scores

Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes

Detection of Wolbachia in the tick Ixodes ricinus is due to the presence of the hymenoptera endoparasitoid Ixodiphagus hookeri

Force transduction and lipid binding in MscL: a continuum-molecular approach

Spatial ecology of bacteria at the microscale in soil

Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks

An interaction network predicted from public data as a discovery tool: application to the Hsp90 molecular chaperone machine

Predictions of hot spot residues at protein-protein interfaces using support vector machines

A new method for the discovery of essential proteins

Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties

Going the distance for protein function prediction: a new distance metric for protein interaction networks

DockQ: A Quality Measure for Protein-Protein Docking Models

Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network

In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences

Predicting protein phenotypes based on protein-protein interaction network

Predicting Anatomical Therapeutic Chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network

PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology

Bagging statistical network inference from large-scale gene expression data

Human activity helps prey win the predator-prey space race

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