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Rise of Deep Learning for Genomic, Proteomic, and Metabolomic Data Integration in Precision Medicine

Omics (Larchmont, N.Y.), 2018-10, Vol.22 (10), p.630-636

2018

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MetaMapR: pathway independent metabolomic network analysis incorporating unknowns

Bioinformatics, 2015-08, Vol.31 (16), p.2757-2760

2015

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Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

PloS one, 2017-01, Vol.12 (1), p.e0171046-e0171046

2017

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Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma

Carcinogenesis (New York), 2017-03, Vol.38 (3), p.271-280

2017

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Deep metabolome: Applications of deep learning in metabolomics

Computational and structural biotechnology journal, 2020-01, Vol.18, p.2818-2825

2020

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Genomic, Proteomic, and Metabolomic Data Integration Strategies

Biomarker Insights, 2015-01, Vol.2015 (S4), p.1-6

2015

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Lipid mediated plant immunity in susceptible and tolerant soybean cultivars in response to Phytophthora sojae colonization and infection

BMC plant biology, 2024-03, Vol.24 (1), p.154-26, Article 154

2024

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Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study

The American journal of clinical nutrition, 2015-08, Vol.102 (2), p.433-443

2015

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Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice

Scientific reports, 2017-10, Vol.7 (1), p.12488-13, Article 12488

2017

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Type 2 Diabetes Associated Changes in the Plasma Non-Esterified Fatty Acids, Oxylipins and Endocannabinoids

PloS one, 2012-11, Vol.7 (11), p.e48852-e48852

2012

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Phyto-oxylipin mediated plant immune response to colonization and infection in the soybean- Phytophthora sojae pathosystem

Frontiers in plant science, 2023-05, Vol.14, p.1141823

2023

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Human Milk Secretory Immunoglobulin A and Lactoferrin N-Glycans Are Altered in Women with Gestational Diabetes Mellitus

The Journal of nutrition, 2013-12, Vol.143 (12), p.1906-1912

2013

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Metabolomics in psoriatic disease: pilot study reveals metabolite differences in psoriasis and psoriatic arthritis [version 1; peer review: 2 approved]

F1000 research, 2014, Vol.3, p.248-248

2014

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Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma

Cancer prevention research (Philadelphia, Pa.), 2015-05, Vol.8 (5), p.410-418

2015

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Primary HCMV infection in pregnancy from classic data towards metabolomics: An exploratory analysis

Clinica chimica acta, 2016-09, Vol.460, p.23-32

2016

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Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder

PloS one, 2015-01, Vol.10 (1), p.e0117092

2015

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Enhanced Carbon Nanotubes Growth Using Nickel/Ferrocene-Hybridized Catalyst

ACS omega, 2017-09, Vol.2 (9), p.6063-6071

2017

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Improved Metabolic Health Alters Host Metabolism in Parallel with Changes in Systemic Xeno-Metabolites of Gut Origin

PloS one, 2014-01, Vol.9 (1), p.e84260

2014

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Impact of a weight loss and fitness intervention on exercise‐associated plasma oxylipin patterns in obese, insulin‐resistant, sedentary women

Physiological reports, 2020-09, Vol.8 (17), p.e14547-n/a

2020

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Review of emerging metabolomic tools and resources: 2015–2016

Electrophoresis, 2017-09, Vol.38 (18), p.2257-2274

2017

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Integrating multiple analytical datasets to compare metabolite profiles of mouse colonic-cecal contents and feces

Metabolites, 2015-09, Vol.5 (3), p.489-501

2015

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LC–MS Metabolomics of Psoriasis Patients Reveals Disease Severity-Dependent Increases in Circulating Amino Acids That Are Ameliorated by Anti-TNFα Treatment

Journal of proteome research, 2015-01, Vol.14 (1), p.557-566

2015

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imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel

Bioinformatics, 2012-09, Vol.28 (17), p.2288-2290

2012

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Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia

American journal of physiology: endocrinology and metabolism, 2015-06, Vol.308 (11), p.E978-E989

2015

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Enhanced field emission properties of carbon nanotube bundles confined in SiO2 pits

Nanotechnology, 2018-02, Vol.29 (7), p.075205-075205

2018

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Rise of Deep Learning for Genomic, Proteomic, and Metabolomic Data Integration in Precision Medicine

MetaMapR: pathway independent metabolomic network analysis incorporating unknowns

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma

Deep metabolome: Applications of deep learning in metabolomics

Genomic, Proteomic, and Metabolomic Data Integration Strategies

Lipid mediated plant immunity in susceptible and tolerant soybean cultivars in response to Phytophthora sojae colonization and infection

Metabolomics and transcriptomics identify pathway differences between visceral and subcutaneous adipose tissue in colorectal cancer patients: the ColoCare study

Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice

Type 2 Diabetes Associated Changes in the Plasma Non-Esterified Fatty Acids, Oxylipins and Endocannabinoids

Phyto-oxylipin mediated plant immune response to colonization and infection in the soybean- Phytophthora sojae pathosystem

Human Milk Secretory Immunoglobulin A and Lactoferrin N-Glycans Are Altered in Women with Gestational Diabetes Mellitus

Metabolomics in psoriatic disease: pilot study reveals metabolite differences in psoriasis and psoriatic arthritis [version 1; peer review: 2 approved]

Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma

Primary HCMV infection in pregnancy from classic data towards metabolomics: An exploratory analysis

Acute and chronic plasma metabolomic and liver transcriptomic stress effects in a mouse model with features of post-traumatic stress disorder

Enhanced Carbon Nanotubes Growth Using Nickel/Ferrocene-Hybridized Catalyst

Improved Metabolic Health Alters Host Metabolism in Parallel with Changes in Systemic Xeno-Metabolites of Gut Origin

Impact of a weight loss and fitness intervention on exercise‐associated plasma oxylipin patterns in obese, insulin‐resistant, sedentary women

Review of emerging metabolomic tools and resources: 2015–2016

Integrating multiple analytical datasets to compare metabolite profiles of mouse colonic-cecal contents and feces

LC–MS Metabolomics of Psoriasis Patients Reveals Disease Severity-Dependent Increases in Circulating Amino Acids That Are Ameliorated by Anti-TNFα Treatment

imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel

Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia

Enhanced field emission properties of carbon nanotube bundles confined in SiO2 pits

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