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Remote homology search with hidden Potts models

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008085-e1008085

2020

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Calibrating dimension reduction hyperparameters in the presence of noise

PLoS computational biology, 2024-09, Vol.20 (9), p.e1012427

2024

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FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

PLoS computational biology, 2024-01, Vol.20 (1), p.e1011786-e1011786

2024

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Identifying the combinatorial control of signal-dependent transcription factors

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009095-e1009095

2021

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A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011880-e1011880

2024

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Inference of annealed protein fitness landscapes with AnnealDCA

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011812-e1011812

2024

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Emergence of cooperative bistability and robustness of gene regulatory networks

PLoS computational biology, 2020-06, Vol.16 (6), p.e1007969-e1007969

2020

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Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion

PLoS computational biology, 2021-04, Vol.17 (4), p.e1008218-e1008218

2021

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Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies

PLoS computational biology, 2023-10, Vol.19 (10), p.e1010608-e1010608

2023

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Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008379

2021

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Mesoscale, long-time mixing of chromosomes and its connection to polymer dynamics

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011142-e1011142

2023

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Internet addiction and sleep quality among adolescents in a peri-urban setting in Nepal: A cross-sectional school-based survey

PloS one, 2021-02, Vol.16 (2), p.e0246940-e0246940

2021

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DID INDIA EVER HAVE A RIGHT TO THE CITY MOVEMENT? Rethinking Housing Justice in Violent Times

International journal of urban and regional research, 2024-07, Vol.48 (4), p.650-664

Pati, Sushmita

2024

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CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009670-e1009670

2021

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The Impact of Biases on Financial Decisions and the Role of Financial Literacy Combating them: A Review

Asian Journal of Research in Banking and Finance, 2018, Vol.8 (5), p.96

Sushmita

2018

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Learning and interpreting the gene regulatory grammar in a deep learning framework

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008334-e1008334

2020

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Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets

PLoS computational biology, 2019-11, Vol.15 (11), p.e1007337-e1007337

2019

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Differential Expression Profile of NLRs and AIM2 in Glioma and Implications for NLRP12 in Glioblastoma

Scientific reports, 2019-06, Vol.9 (1), p.8480-8480, Article 8480

2019

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Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

PLoS computational biology, 2020-04, Vol.16 (4), p.e1007197

2020

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Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008819-e1008819

2021

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Sustainable packaging for supply chain management in the circular economy: A review

Journal of cleaner production, 2019-11, Vol.237, p.117582, Article 117582

2019

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Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008354-e1008354

2020

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Learning clinical networks from medical records based on information estimates in mixed-type data

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007866-e1007866

2020

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Full-length ribosome density prediction by a multi-input and multi-output model

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008842-e1008842

2021

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Efficient representations of tumor diversity with paired DNA-RNA aberrations

PLoS computational biology, 2021-06, Vol.17 (6), p.e1008944-e1008944

2021

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Remote homology search with hidden Potts models

Calibrating dimension reduction hyperparameters in the presence of noise

FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

Identifying the combinatorial control of signal-dependent transcription factors

A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization

Inference of annealed protein fitness landscapes with AnnealDCA

Emergence of cooperative bistability and robustness of gene regulatory networks

Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion

Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies

Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples

Mesoscale, long-time mixing of chromosomes and its connection to polymer dynamics

Internet addiction and sleep quality among adolescents in a peri-urban setting in Nepal: A cross-sectional school-based survey

DID INDIA EVER HAVE A RIGHT TO THE CITY MOVEMENT? Rethinking Housing Justice in Violent Times

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

The Impact of Biases on Financial Decisions and the Role of Financial Literacy Combating them: A Review

Learning and interpreting the gene regulatory grammar in a deep learning framework

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets

Differential Expression Profile of NLRs and AIM2 in Glioma and Implications for NLRP12 in Glioblastoma

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer

Sustainable packaging for supply chain management in the circular economy: A review

Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines

Learning clinical networks from medical records based on information estimates in mixed-type data

Full-length ribosome density prediction by a multi-input and multi-output model

Efficient representations of tumor diversity with paired DNA-RNA aberrations

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