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Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics

Proceedings of the National Academy of Sciences - PNAS, 2017-07, Vol.114 (27), p.7049-7054

2017

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A molecular view of DNA flexibility

Quarterly reviews of biophysics, 2021, Vol.54, Article e8

2021

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Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Molecular cell, 2020-12, Vol.80 (6), p.1039-1054.e6

2020

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Long Noncoding RNA NIHCOLE Promotes Ligation Efficiency of DNA Double-Strand Breaks in Hepatocellular Carcinoma

Cancer research (Chicago, Ill.), 2021-10, Vol.81 (19), p.4910-4925

2021

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Bulk and single-molecule analysis of a bacterial DNA2-like helicase–nuclease reveals a single-stranded DNA looping motor

Nucleic acids research, 2020-08, Vol.48 (14), p.7991-8005

2020

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APLF and long non-coding RNA NIHCOLE promote stable DNA synapsis in non-homologous end joining

Cell reports (Cambridge), 2023-01, Vol.42 (1), p.111917-111917, Article 111917

2023

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High flexibility of DNA on short length scales probed by atomic force microscopy

Nature nanotechnology, 2006-11, Vol.1 (2), p.137-141

2006

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AFM volumetric methods for the characterization of proteins and nucleic acids

Methods (San Diego, Calif.), 2013-04, Vol.60 (2), p.113-121

2013

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Bacillus subtilis MutS Modulates RecA-Mediated DNA Strand Exchange Between Divergent DNA Sequences

Frontiers in microbiology, 2019-02, Vol.10, p.237-237

2019

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On the mechanism of recombination hotspot scanning during double-stranded DNA break resection

Proceedings of the National Academy of Sciences - PNAS, 2013-07, Vol.110 (28), p.E2562-E2571

2013

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The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere

eLife, 2017-12, Vol.6

2017

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Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

Nature, 2005-09, Vol.437 (7057), p.440-443

2005

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ParB dynamics and the critical role of the CTD in DNA condensation unveiled by combined force-fluorescence measurements

eLife, 2019-03, Vol.8

2019

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CtIP forms a tetrameric dumbbell-shaped particle which bridges complex DNA end structures for double-strand break repair

eLife, 2019-01, Vol.8

2019

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CTP promotes efficient ParB-dependent DNA condensation by facilitating one-dimensional diffusion from parS

eLife, 2021-07, Vol.10

2021

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Magnetic Tweezers: Probing DNA Helicase Kinetics with Temperature-Controlled Magnetic Tweezers (Small 11/2015)

Small (Weinheim an der Bergstrasse, Germany), 2015-03, Vol.11 (11), p.1225-1225

2015

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Recombination Hotspots and Single-Stranded DNA Binding Proteins Couple DNA Translocation to DNA Unwinding by the AddAB Helicase-Nuclease

Molecular cell, 2011-06, Vol.42 (6), p.806-816

2011

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Biochemical, Ultrastructural, and Reversibility Studies on Huntingtin Filaments Isolated from Mouse and Human Brain

The Journal of neuroscience, 2004-10, Vol.24 (42), p.9361-9371

2004

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Recent insights into eukaryotic double-strand DNA break repair unveiled by single-molecule methods

Trends in genetics, 2023-12, Vol.39 (12), p.924-940

2023

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DNA Crookedness Regulates DNA Mechanical Properties at Short Length Scales

Physical review letters, 2019-02, Vol.122 (4), p.048102-048102, Article 048102

2019

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Functional characterization of the different oligomeric forms of human surfactant protein SP-D

Biochimica et biophysica acta. Proteins and proteomics, 2020-08, Vol.1868 (8), p.140436-140436, Article 140436

2020

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Human HELB is a processive motor protein that catalyzes RPA clearance from single-stranded DNA

Proceedings of the National Academy of Sciences - PNAS, 2022-04, Vol.119 (15), p.e2112376119-e2112376119

2022

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Biochemical and biophysical characterization of human HELB and its role in the processing of RPA-ssDNA filaments

Biophysical journal, 2022-02, Vol.121 (3), p.4a-4a

2022

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Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes

Nucleic acids research, 2020-05, Vol.48 (9), p.5024-5036

2020

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Characterizing microfluidic approaches for a fast and efficient reagent exchange in single-molecule studies

Scientific reports, 2020-10, Vol.10 (1), p.18069-18069, Article 18069

2020

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Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics

A molecular view of DNA flexibility

Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Long Noncoding RNA NIHCOLE Promotes Ligation Efficiency of DNA Double-Strand Breaks in Hepatocellular Carcinoma

Bulk and single-molecule analysis of a bacterial DNA2-like helicase–nuclease reveals a single-stranded DNA looping motor

APLF and long non-coding RNA NIHCOLE promote stable DNA synapsis in non-homologous end joining

High flexibility of DNA on short length scales probed by atomic force microscopy

AFM volumetric methods for the characterization of proteins and nucleic acids

Bacillus subtilis MutS Modulates RecA-Mediated DNA Strand Exchange Between Divergent DNA Sequences

On the mechanism of recombination hotspot scanning during double-stranded DNA break resection

The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere

Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

ParB dynamics and the critical role of the CTD in DNA condensation unveiled by combined force-fluorescence measurements

CtIP forms a tetrameric dumbbell-shaped particle which bridges complex DNA end structures for double-strand break repair

CTP promotes efficient ParB-dependent DNA condensation by facilitating one-dimensional diffusion from parS

Magnetic Tweezers: Probing DNA Helicase Kinetics with Temperature-Controlled Magnetic Tweezers (Small 11/2015)

Recombination Hotspots and Single-Stranded DNA Binding Proteins Couple DNA Translocation to DNA Unwinding by the AddAB Helicase-Nuclease

Biochemical, Ultrastructural, and Reversibility Studies on Huntingtin Filaments Isolated from Mouse and Human Brain

Recent insights into eukaryotic double-strand DNA break repair unveiled by single-molecule methods

DNA Crookedness Regulates DNA Mechanical Properties at Short Length Scales

Functional characterization of the different oligomeric forms of human surfactant protein SP-D

Human HELB is a processive motor protein that catalyzes RPA clearance from single-stranded DNA

Biochemical and biophysical characterization of human HELB and its role in the processing of RPA-ssDNA filaments

Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes

Characterizing microfluidic approaches for a fast and efficient reagent exchange in single-molecule studies

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